NIH, National Cancer Institute, Division of Cancer Treatment and Diagnosis (DCTD) NIH - National Institutes of Health National Cancer Institute DCTD - Division of Cancer Treatment and Diagnosis

Digital Image Analysis of Whole Slide Images   Add to my SOP compendium

BRD ID: 2,687

Source: CIMAC-CIDC Network Tier: SOP Number of times downloaded: 1391


This document describes the procedures used by the Icahn School of Medicine at Mount Sinai, a Cancer Immune Monitoring and Analysis (CIMAC) site, for the generation of whole slide images by scanning pathology slides using opensource software. It is a product of the CIMAC and Cancer Immunologic Data Commons (CIMAC-CIDC) Network (CIMAC-CIDC Network;, which was established as part of the Cancer Moonshot Initiative. SOPs are available at

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CIMAC Whole Slide (mIHC) Image Analysis_MSSM.pdf [Size: 873 KB]

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