NIH, National Cancer Institute, Division of Cancer Treatment and Diagnosis (DCTD) NIH - National Institutes of Health National Cancer Institute DCTD - Division of Cancer Treatment and Diagnosis

Optimized Fixation and Storage Conditions for FISH Analysis of Single-Cell Suspensions

Author(s): Murrell-Bussell S, Nguyen D, Schober WD, Scott J, Simpson JL, Elias S, Bischoff FZ, Lewis DE

Publication: J Histochem Cytochem, 1998, Vol. 46, Page 971

PubMed ID: 9671447 PubMed Review Paper? No

Purpose of Paper

To determine the impact of fixation (paraformaldehdye concentration) and storage parameters (PBS storage duration) on the quality of fluoresence in situ hybridization (FISH) signals.

Conclusion of Paper

While FISH analysis was successful using both 1% and 3% paraformaldehyde (PF) fixed cells, the latter provided superior signal and stability over time (21 days in PBS).

Studies

  1. Study Purpose

    To determine if the distribution of the cell population was affected by fixative concentration (1 vs 3% PF) and subsequent storage in PBS at 4 degrees C (0-21 days).

    Summary of Findings:

    Forward scatter progressively decreased with PBS storage beginning on day 3 in 1% PF fixed cells and day 7 in all other fixed cells. The reduction in light scatter was less robust in cells fixed with 3% PF, indicating greater stability.

    Biospecimens
    Preservative Types
    • Other Preservative
    Diagnoses:
    • Not specified
    Platform:
    AnalyteTechnology Platform
    Cell count/volume Flow cytometry
    Pre-analytical Factors:
    ClassificationPre-analytical FactorValue(s)
    Storage Storage duration 0 days
    3 days
    7 days
    10 days
    21 days
    Biospecimen Preservation Concentration of fixative 1% paraformaldehyde
    3% paraformaldehyde
  2. Study Purpose

    To determine if cell mophology was impacted by fixative concentration and subsequent storage in PBS at 4 degrees C.

    Summary of Findings:

    The structural integrity of cells fixed in 1% and 3% PF was compromised on day 3 and 21, respectively.

    Biospecimens
    Preservative Types
    • Other Preservative
    Diagnoses:
    • Not specified
    Platform:
    AnalyteTechnology Platform
    Cell count/volume Flow cytometry
    Pre-analytical Factors:
    ClassificationPre-analytical FactorValue(s)
    Storage Storage duration 0 days
    3 days
    7 days
    10 days
    21 days
    Biospecimen Preservation Concentration of fixative 1% paraformaldehyde
    3% paraformaldehyde
  3. Study Purpose

    To determine if FISH signal intensity was affected by fixative concentration (1% vs 3% PF) and subsequent storage in PBS at 4 degrees C (0-21 days).

    Summary of Findings:

    FISH signal intensity, determined by signal/noise ratio, was greatest on day 3 and 10 in cells fixed with 1% and 3% PF for 60 min, respectively. FISH signal clarity in 3% PF fixed cells was superior to those fixed in 1% PF, although signals were stable at both concentrations until day 10, with degradation onset by day 21.

    Biospecimens
    Preservative Types
    • Other Preservative
    Diagnoses:
    • Not specified
    Platform:
    AnalyteTechnology Platform
    DNA FISH
    Pre-analytical Factors:
    ClassificationPre-analytical FactorValue(s)
    Storage Storage duration 0 days
    3 days
    7 days
    10 days
    21 days
    Biospecimen Preservation Concentration of fixative 1% paraformaldehyde
    3% paraformaldehyde

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