GTEX-11GSP
|
61-70
|
Female
|
GTEX-11GSP-1626 |
Colon, transverse
|
PAXgene |
2
|
5 pieces; mucosa severely autolyzed (not suitable for GTEx); muscularis slightly autolyzed
|
Acceptable
|
|
GTEX-11I78
|
51-60
|
Female
|
GTEX-11I78-1226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, mucosa well- preserved, up to ~0.5mm thick
|
Acceptable
|
|
GTEX-11ILO
|
41-50
|
Female
|
GTEX-11ILO-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa=3; muscle=1
|
Acceptable
|
|
GTEX-11LCK
|
21-40
|
Male
|
GTEX-11LCK-2026 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, mucosa reasonably well preserved, focally approaches score '2' in a few foci; ~10% total thicknees, averaging 0.3-0.4mm
|
Acceptable
|
|
GTEX-11NSD
|
21-40
|
Male
|
GTEX-11NSD-1626 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, well preserved mucosa is ~0.4mm thick, ~15% thickness
|
Acceptable
|
|
GTEX-11NUK
|
51-60
|
Male
|
GTEX-11NUK-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, includes muscularis and severely autolyzed mucosa
|
Acceptable
|
|
GTEX-11O72
|
41-50
|
Male
|
GTEX-11O72-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa is totally autolyzed, but muscularis is OK (1) as is mucosal lymphoid tissue
|
Acceptable
|
|
GTEX-11OF3
|
61-70
|
Male
|
GTEX-11OF3-1626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa autolyzed =3; muscle = 1.
|
Acceptable
|
|
GTEX-11ONC
|
61-70
|
Male
|
GTEX-11ONC-2026 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; 3 with minimal mucosa
|
Acceptable
|
|
GTEX-11P7K
|
21-40
|
Male
|
GTEX-11P7K-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; 2 without muscularis
|
Acceptable
|
|
GTEX-11P81
|
21-40
|
Female
|
GTEX-11P81-1126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, each containing muscularis and varying amounts of mucosa
|
Acceptable
|
|
GTEX-11P82
|
21-40
|
Male
|
GTEX-11P82-1026 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, mucosa is ~0.3mm thick, ~ 5% thickness
|
Acceptable
|
|
GTEX-11PRG
|
51-60
|
Male
|
GTEX-11PRG-1926 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, mucosa ~0.5mm thick, ~20% thickness, moderately autolyzed
|
Acceptable
|
|
GTEX-11TT1
|
21-40
|
Male
|
GTEX-11TT1-1026 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, predominantly mucosa with few strips of muscularis, edema and ischemic change
|
Acceptable
|
|
GTEX-11TTK
|
61-70
|
Female
|
GTEX-11TTK-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa too autolyzed for GTEx, but muscularis is acceptable
|
Acceptable
|
|
GTEX-11TUW
|
61-70
|
Male
|
GTEX-11TUW-2026 |
Colon, transverse
|
PAXgene |
3
|
8 pieces, muscularis and severely autolyzed mucosa
|
Acceptable
|
|
GTEX-11UD2
|
51-60
|
Male
|
GTEX-11UD2-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, mucosa completely autolyzed/sloughted
|
Acceptable
|
|
GTEX-11VI4
|
41-50
|
Female
|
GTEX-11VI4-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces well dissected full thickness of colon
|
Acceptable
|
|
GTEX-11WQC
|
61-70
|
Male
|
GTEX-11WQC-2126 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, severely autolyzed mucosa and muscularis
|
Acceptable
|
|
GTEX-11WQK
|
51-60
|
Male
|
GTEX-11WQK-2126 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, all muscularis, switch with 2525
|
Quarantine/Issues Pending
|
|
GTEX-11XUK
|
41-50
|
Female
|
GTEX-11XUK-1226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; poorly sampled: mucosa in 2 pieces, muscle in 5
|
Acceptable
|
|
GTEX-11ZTS
|
61-70
|
Female
|
GTEX-11ZTS-1726 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, mucosa ~60% thickness, variably but generally moderately-markedly autolyzed
|
Acceptable
|
|
GTEX-11ZTT
|
61-70
|
Female
|
GTEX-11ZTT-1326 |
Colon, transverse
|
PAXgene |
1
|
4 pieces, 2 are mucosa and submucosa, two include mucosa and muscularis
|
Acceptable
|
|
GTEX-11ZU8
|
61-70
|
Male
|
GTEX-11ZU8-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, mucosa totally autolyzed, ~0.1mm thick
|
Acceptable
|
|
GTEX-11ZUS
|
21-40
|
Male
|
GTEX-11ZUS-2226 |
Colon, transverse
|
PAXgene |
3
|
4 pieces, mucosa (severely autolyzed) and muscularis
|
Acceptable
|
|