GTEX-14E6E
|
21-40
|
Male
|
GTEX-14E6E-1526 |
Colon, transverse
|
PAXgene |
0
|
6 pieces; 4 have no muscle, 2 have small amounts of muscle
|
Acceptable
|
|
GTEX-14E7W
|
61-70
|
Male
|
GTEX-14E7W-2526 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; grade 3 autolyzed mucosa; preserved muscularis; congestion; prominent lymphoid aggregates (outlined)
|
Acceptable
|
|
GTEX-14H4A
|
41-50
|
Female
|
GTEX-14H4A-1926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; mostly well preserved, mucosa and muscularis
|
Acceptable
|
|
GTEX-14ICK
|
41-50
|
Male
|
GTEX-14ICK-1026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa autolyzed, muscle intact; 1 piece has no muscularis
|
Acceptable
|
|
GTEX-14ICL
|
21-40
|
Male
|
GTEX-14ICL-1226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, mucosa largely sloughed, trace residual lamina propria remains
|
Acceptable
|
|
GTEX-14JFF
|
61-70
|
Male
|
GTEX-14JFF-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, mucosa partially sloughed, residual up to ~0.25mm, glandular elements completely autolyzed
|
Acceptable
|
|
GTEX-14JG1
|
41-50
|
Male
|
GTEX-14JG1-2726 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa autolyzed, muscle intact; LCM
|
Unacceptable
|
|
GTEX-14JG6
|
21-40
|
Female
|
GTEX-14JG6-1726 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; all with mucosa/submucosa/muscularis
|
Acceptable
|
|
GTEX-14JIY
|
61-70
|
Male
|
GTEX-14JIY-3126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, testis, pronounced tubular hyalinization, 50% rete testis, viable islands of non hyperplastic Leydig cells, switched with 3325
|
Unacceptable
|
|
GTEX-14JIY
|
61-70
|
Male
|
GTEX-14JIY-3326 |
Colon, transverse
|
PAXgene |
1
|
2 pieces colon with mucosa, the latter ~0.5mm, well preserved, switched with 3125
|
Acceptable
|
|
GTEX-14LLW
|
61-70
|
Female
|
GTEX-14LLW-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa totally autolyzed; muscularis intact; LCM
|
Unacceptable
|
|
GTEX-14LZ3
|
61-70
|
Female
|
GTEX-14LZ3-2726 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; full thickness sections with autolyzed mucosa
|
Acceptable
|
|
GTEX-14PHW
|
61-70
|
Female
|
GTEX-14PHW-2726 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, mucosa is up to ~0.25mm but glandulare elements completely autolyzed
|
Acceptable
|
|
GTEX-14PHX
|
51-60
|
Male
|
GTEX-14PHX-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; well preserved. well trimmed
|
Acceptable
|
|
GTEX-14PHY
|
61-70
|
Female
|
GTEX-14PHY-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; autolyzed small bowel (not target) mucosa and muscularis
|
Unacceptable
|
|
GTEX-14PII
|
61-70
|
Male
|
GTEX-14PII-2326 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, mucosa ~0.25mm, ~10-15% thickness, many areas autolysis approached score 3 with sloughing of glandular elements
|
Acceptable
|
|
GTEX-14PJ2
|
51-60
|
Male
|
GTEX-14PJ2-2526 |
Colon, transverse
|
PAXgene |
3
|
4 pieces; completely autolyzed mucosa and preserved muscularis
|
Acceptable
|
|
GTEX-14PJ3
|
51-60
|
Male
|
GTEX-14PJ3-0926 |
Colon, transverse
|
PAXgene |
1
|
3 pieces; muscularis only, no mucosa (also target)
|
Acceptable
|
|
GTEX-14PJ4
|
61-70
|
Male
|
GTEX-14PJ4-1926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; essentially well preserved mucosa
|
Acceptable
|
|
GTEX-14PJ5
|
51-60
|
Female
|
GTEX-14PJ5-0926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces with colon mucosa up to ~0.35mm, switched with 1025
|
Acceptable
|
|
GTEX-14PJ6
|
61-70
|
Female
|
GTEX-14PJ6-1926 |
Colon, transverse
|
PAXgene |
1
|
4 pieces, mucosa up to ~0.4mm, ~15% thickness, well preserved
|
Acceptable
|
|
GTEX-14PJM
|
51-60
|
Female
|
GTEX-14PJM-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; autolyzed mucosa, muscle intact
|
Acceptable
|
|
GTEX-14PJN
|
21-40
|
Male
|
GTEX-14PJN-1226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces not colon, small bowel, unkonwn region, not GTEx target.
|
Unacceptable
|
|
GTEX-14PJO
|
61-70
|
Male
|
GTEX-14PJO-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; mucosa autolyzed, muscle intact
|
Acceptable
|
|
GTEX-14PK6
|
61-70
|
Female
|
GTEX-14PK6-1726 |
Colon, transverse
|
PAXgene |
0
|
6 pieces, mucosa well preserved, ~0.2-0.3mm, ~25% thickness
|
Acceptable
|
|