GTEX-1S5VW
|
61-70
|
Male
|
GTEX-1S5VW-2726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, confirmed target muscularis
|
Acceptable
|
|
GTEX-1S5ZA
|
21-40
|
Male
|
GTEX-1S5ZA-1426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, confirmed target muscularis
|
Acceptable
|
|
GTEX-1S5ZU
|
21-40
|
Female
|
GTEX-1S5ZU-2426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; extraneous fibrous and fatty tissue in several pieces
|
Acceptable
|
|
GTEX-1S82P
|
61-70
|
Female
|
GTEX-1S82P-2026 |
Colon, sigmoid
|
PAXgene |
1
|
5 pieces; two pieces with small fragments of mucosa and serosal fat (outlined);
|
Acceptable
|
|
GTEX-1S82U
|
21-40
|
Female
|
GTEX-1S82U-0826 |
Colon, sigmoid
|
PAXgene |
1
|
5 pieces, sections of small bowel, not sigmoid muscularis
|
Unacceptable
|
|
GTEX-1S82Z
|
21-40
|
Female
|
GTEX-1S82Z-2026 |
Colon, sigmoid
|
PAXgene |
1
|
5 pieces, fragmented, target muscularis present but < 50% of specimen, ~30-35%
|
Unacceptable
|
|
GTEX-1S831
|
21-40
|
Male
|
GTEX-1S831-1726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; target muscularis; small fragment of colonic mucosa (outlined)
|
Acceptable
|
|
GTEX-1S83E
|
41-50
|
Male
|
GTEX-1S83E-1726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; target muscularis
|
Acceptable
|
|
GTEX-U8XE
|
21-40
|
Male
|
GTEX-U8XE-2326 |
Colon, sigmoid
|
PAXgene |
3
|
6 pieces `8x3mm. Mucosa badly autolyzed ~5-10% thickness
|
Acceptable
|
|
GTEX-UPJH
|
51-60
|
Male
|
GTEX-UPJH-2126 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces ~7x 1.5mm Mucosa poorly preserved, ~30% of thickness (~300 microns)
|
Acceptable
|
|
GTEX-UPK5
|
41-50
|
Male
|
GTEX-UPK5-2426 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 7x2mm; all have mucosa and muscularis; mucosa largely autolyzed
|
Acceptable
|
|
GTEX-UTHO
|
61-70
|
Male
|
GTEX-UTHO-2626 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 6x1mm; muscularis moderately autolyzed; totally autolyzed mucosa present
|
Acceptable
|
|
GTEX-V1D1
|
51-60
|
Male
|
GTEX-V1D1-1626 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces ~6x1mm mucosa is ~25% of thickness
|
Acceptable
|
|
GTEX-V955
|
51-60
|
Male
|
GTEX-V955-1726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces ~9x3mm, presumed sigmoid. Essentially all muscle, well preserved
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-2626 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 8x2mm; mucosa totally autolyzed; muscle in better shape;
|
Acceptable
|
|
GTEX-VJYA
|
61-70
|
Male
|
GTEX-VJYA-2126 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces ~6x3mm. Mucosa well preserved, ~15-20% thickness
|
Acceptable
|
|
GTEX-VUSG
|
51-60
|
Male
|
GTEX-VUSG-1926 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces ~12x4mm. All muscularis propria, excellent specimen
|
Acceptable
|
|
GTEX-W5WG
|
51-60
|
Female
|
GTEX-W5WG-2026 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces ~7x4mm, mainly muscularis, ~10 mucosa present, moderately preserved
|
Acceptable
|
|
GTEX-W5X1
|
41-50
|
Female
|
GTEX-W5X1-1826 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 8x2mm; virtually all muscle as targeted; minute focal mucosa in 2 pieces
|
Acceptable
|
|
GTEX-WEY5
|
41-50
|
Female
|
GTEX-WEY5-1626 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 9x5mm; all are full thickness with up to 2 mm adipose, should only contain muscle without extramural adipose; muscle slightly autolyzed, mucosa moderately autolyzed
|
Acceptable
|
|
GTEX-WFG7
|
21-40
|
Male
|
GTEX-WFG7-1626 |
Colon, sigmoid
|
PAXgene |
1
|
5 pieces ~6x3mm. All muscle, excellent specimens.
|
Acceptable
|
|
GTEX-WFG8
|
21-40
|
Male
|
GTEX-WFG8-1726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces ~8x2mm. All muscle in 3; contaminant mucosa is 3, encircled
|
Acceptable
|
|
GTEX-WFJO
|
21-40
|
Male
|
GTEX-WFJO-1226 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 7x3mm; all have mucosa, 3 have muscle; Muscle is slightly autolyzed, mucosa is moderately autolyzed.
|
Acceptable
|
|
GTEX-WFON
|
41-50
|
Male
|
GTEX-WFON-1326 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, ~9x2mm. Muscularis and fat, presumed sigmoid aliquots 1525 below
|
Acceptable
|
|
GTEX-WH7G
|
41-50
|
Male
|
GTEX-WH7G-1426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 10x4mm; All have muscularis propria (our target) but 5 of 6 have (unwanted) mucosa
|
Acceptable
|
|