GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1126 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces, largely adipose stroma; few ductal/lobular elements, atrophic, are present, rep. ones delineated
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1226 |
Uterus
|
PAXgene |
1
|
2 pieces, all myometrium, no significant endometrial components noted.
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1326 |
Cervix - endocervix
|
PAXgene |
1
|
6 pieces, all cervix; foci of well-preserved endocervical glands are present, delineated. Since this was a former GTEx target, recommend retaining after re-labeling.
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1426 |
Ovary
|
PAXgene |
0
|
2 pieces, post menopausal involution; both are ~40-50% hilum, delineated
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, all with squamous mucosa ~0.3-0.5mm thick, a switch with 1625
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, all muscularis a switch with 1525
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1726 |
Skin, leg
|
PAXgene |
0
|
6 pieces, minimal dermal fat; squamous epithelium is ~80 microns thick
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1826 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, ~5-10% fibrous/fascial tissue, rep foci delineated
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-1926 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, all muscularis; good specimens; adherent serosa on all, 1-2mm; rep foci delineated
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2026 |
Stomach
|
PAXgene |
1
|
6 pieces, mucosa totoally denuded/sloughed, muscularis only
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2126 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, trace ahderent fat, good specimens
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, moderately well preserved, some foci approach autolysis score 2. Mucosa is 0.3-0.6mm, ~10% total thickness
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2326 |
Ileum
|
PAXgene |
2
|
4 pieces, ~10% mucosa, lymphoid elements, not follicles, not well preserved
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2426 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, pristine specimens. No atherosis
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2526 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, ~10-15% interstitial fat or adherent tendon, delineated
|
Acceptable
|
|
GTEX-ZPIC
|
41-50
|
Female
|
GTEX-ZPIC-2626 |
Colon, sigmoid
|
PAXgene |
1
|
4 pieces, mainly muscularis, 2 have adherent fat/mucosa, the later ~10% of specimen, delineated
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0126 |
Aorta
|
PAXgene |
0
|
6 pieces, fibrofatty adventitia on all pieces
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0226 |
Pancreas
|
PAXgene |
2
|
2 pieces, includes 10-20% internal and attached adipose tissue, some atrophy and fibrosis, focal islets with amyloid-like material
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0326 |
Adrenal glands
|
PAXgene |
1
|
2 pieces
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0426 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, one piece has small attachment of adipose and fibrovascular tissue, focal adipose metaplasia of stroma
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0526 |
Coronary artery
|
PAXgene |
1
|
2 pieces, calcific atherosclerosis, focal adventitial lymphoid deposits, perivascular fat up to 1.4mm thick
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0626 |
Heart
|
PAXgene |
1
|
2 pieces and small fragment of ?pericardium (not target), delineated.
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0726 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, not omentum as originally labeled; appears to represent atrial appendage specimen with interstitial and patchy fibrosis
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0826 |
Liver
|
PAXgene |
0
|
2 pieces, mild steatosis and focal mild portal chronic inflammation
|
Acceptable
|
|
GTEX-ZPU1
|
41-50
|
Male
|
GTEX-ZPU1-0926 |
Lung
|
PAXgene |
0
|
2 pieces, congestion, pigmented alveolar macrophages, some septal fibrosis and focal chronic inflammation
|
Acceptable
|
|