GTEX-ZLV1
|
61-70
|
Female
|
GTEX-ZLV1-0726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, gastric mucosa, not correct for GTEx
|
Unacceptable
|
 |
GTEX-ZLV1
|
61-70
|
Female
|
GTEX-ZLV1-1626 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces, fat/skeletal muscle fibers only, no glandular tissue
|
Unacceptable
|
 |
GTEX-ZQG8
|
61-70
|
Female
|
GTEX-ZQG8-1726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces. Adipose tissue, no muscle
|
Unacceptable
|
 |
GTEX-ZQUD
|
21-40
|
Male
|
GTEX-ZQUD-0726 |
Colon, transverse
|
PAXgene |
2
|
5 pieces small bowel; not a GTEx target organ
|
Unacceptable
|
 |
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0126 |
Gastroesophageal junction
|
PAXgene |
0
|
6 pieces, all pieces contain mucosa (NOT TARGET), only 3 contain muscularis propria (TARGET)
|
Unacceptable
|
 |
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0826 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, muscularis with scant fragment of mucosa (also TARGET)
|
Unacceptable
|
 |
GTEX-ZTX8
|
21-40
|
Male
|
GTEX-ZTX8-0926 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, 3 pieces are thyroid, 3 are colonic mucosa and muscularis
|
Unacceptable
|
 |
GTEX-ZU9S
|
21-40
|
Male
|
GTEX-ZU9S-1426 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces. Surface epithelium completely sloughed on all 6 pieces.
|
Unacceptable
|
 |
GTEX-ZU9S
|
21-40
|
Male
|
GTEX-ZU9S-1726 |
Thyroid gland
|
PAXgene |
3
|
3 pieces: largest and smallest pieces are skeletal muscle. Thyroid poorly preserved.
|
Unacceptable
|
 |
GTEX-ZU9S
|
21-40
|
Male
|
GTEX-ZU9S-2326 |
Ileum
|
PAXgene |
3
|
4 pieces: no lymphoid tissue, no mucosa
|
Unacceptable
|
 |
GTEX-ZU9S
|
21-40
|
Male
|
GTEX-ZU9S-2726 |
Prostate
|
PAXgene |
1
|
2 pieces. All smooth muscle; no glands.
|
Unacceptable
|
 |
GTEX-ZUA1
|
41-50
|
Male
|
GTEX-ZUA1-1826 |
Pancreas
|
PAXgene |
3
|
2 pieces. Severely autolyzed
|
Unacceptable
|
 |
GTEX-ZV68
|
51-60
|
Female
|
GTEX-ZV68-1326 |
Pancreas
|
PAXgene |
1
|
2 pieces; all adipose tissue, no pancreatic parenchyma is present
|
Unacceptable
|
 |
GTEX-ZV6S
|
41-50
|
Female
|
GTEX-ZV6S-0326 |
Esophagus - mucosa
|
PAXgene |
1
|
4 pieces, 2 include glandular mucosa (demarcated) of gastroesophageal junction (NOT TARGET)
|
Unacceptable
|
 |
GTEX-ZV6S
|
41-50
|
Female
|
GTEX-ZV6S-0526 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces, well trimmed
|
Unacceptable
|
 |
GTEX-ZV6S
|
41-50
|
Female
|
GTEX-ZV6S-1026 |
Ileum
|
PAXgene |
2
|
5 pieces, predominantly submucosa and strips of colonic mucosa
|
Unacceptable
|
 |
GTEX-ZV6S
|
41-50
|
Female
|
GTEX-ZV6S-1926 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces, no salivary gland tissue present, specimen consists of squamous mucosa, stroma and skeletal muscle.
|
Unacceptable
|
 |
GTEX-ZV7C
|
51-60
|
Male
|
GTEX-ZV7C-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
3 pieces, essentially all gastric cardia, minute focus squamous mucosa delineated. Not part of GTEx
|
Unacceptable
|
 |
GTEX-ZV7C
|
51-60
|
Male
|
GTEX-ZV7C-1926 |
Prostate
|
PAXgene |
1
|
1 piece. Diffuse high grade adenocarcinoma (Gleason sum score 5+4=9). Cannot be used for GTEx
|
Unacceptable
|
 |
GTEX-ZVE1
|
51-60
|
Female
|
GTEX-ZVE1-1826 |
Liver
|
PAXgene |
3
|
2 pieces, congested
|
Unacceptable
|
 |
GTEX-ZVE1
|
51-60
|
Female
|
GTEX-ZVE1-2326 |
Adrenal glands
|
PAXgene |
3
|
2 pieces
|
Unacceptable
|
 |
GTEX-ZVE1
|
51-60
|
Female
|
GTEX-ZVE1-2526 |
Ileum
|
PAXgene |
3
|
4 pieces, fragments of autolyzed mucosa and strips of fat and muscularis, limited lymphoid tissue
|
Unacceptable
|
 |
GTEX-ZVE2
|
51-60
|
Male
|
GTEX-ZVE2-2326 |
Ileum
|
PAXgene |
2
|
5 pieces, no lymphoid tissue
|
Unacceptable
|
 |
GTEX-ZVE2
|
51-60
|
Male
|
GTEX-ZVE2-2726 |
Colon, sigmoid
|
PAXgene |
3
|
6 pieces. Muscle (target) is moderately autolyzed; mucosa (not target) is severly autolyzed, 4 of 6 contain mucosa
|
Unacceptable
|
 |
GTEX-ZVT4
|
51-60
|
Female
|
GTEX-ZVT4-2526 |
Pancreas
|
PAXgene |
3
|
2 pieces autolyzed lymph node, not pancreas
|
Unacceptable
|
 |