GTEX-131XE
|
41-50
|
Male
|
GTEX-131XE-1726 |
Coronary artery
|
PAXgene |
1
|
2 pieces; portions of veins with large amounts of fat and fibrous tissue [>60%]
|
Unacceptable
|
 |
GTEX-131XF
|
51-60
|
Male
|
GTEX-131XF-1526 |
Colon, sigmoid
|
PAXgene |
1
|
5 pieces; mucosa only; (this could be transverse colon)
|
Unacceptable
|
 |
GTEX-131XF
|
51-60
|
Male
|
GTEX-131XF-1626 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; muscularis only (this could be sigmoid )
|
Unacceptable
|
 |
GTEX-131XH
|
51-60
|
Male
|
GTEX-131XH-1926 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, >50% mucosa, incorrect target for sigmoid colon for GTEx purposes
|
Unacceptable
|
 |
GTEX-131XW
|
51-60
|
Female
|
GTEX-131XW-1526 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, cortex and medulla
|
Unacceptable
|
 |
GTEX-131XW
|
51-60
|
Female
|
GTEX-131XW-2326 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, lung, not atrial appendage
|
Unacceptable
|
 |
GTEX-131XW
|
51-60
|
Female
|
GTEX-131XW-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, muscularis and severely autolyzed mucosa
|
Unacceptable
|
 |
GTEX-131XW
|
51-60
|
Female
|
GTEX-131XW-2626 |
Ileum
|
PAXgene |
2
|
6 pieces, good lymphoid component, but includes abundant muscularis
|
Unacceptable
|
 |
GTEX-131YS
|
61-70
|
Female
|
GTEX-131YS-1326 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces; 3 of 6 contain gastric mucosa (not target) in addition to muscularis (target)
|
Unacceptable
|
 |
GTEX-131YS
|
61-70
|
Female
|
GTEX-131YS-2126 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; multiple pieces contain medulla (up to 40%); congestion
|
Unacceptable
|
 |
GTEX-131YS
|
61-70
|
Female
|
GTEX-131YS-2526 |
Ileum
|
PAXgene |
3
|
4 pieces; no evidence of viable mucosa and no lymphoid nodules
|
Unacceptable
|
 |
GTEX-132AR
|
51-60
|
Female
|
GTEX-132AR-2626 |
Ileum
|
PAXgene |
2
|
4 pieces; well dissected mucosa, but limited amount of lymphoid tissue (delineated); LCM may be possible
|
Unacceptable
|
 |
GTEX-132Q8
|
61-70
|
Male
|
GTEX-132Q8-0826 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; not thyroid, squamous epithelium and skeletal and smooth muscle
|
Unacceptable
|
 |
GTEX-132Q8
|
61-70
|
Male
|
GTEX-132Q8-2226 |
Coronary artery
|
PAXgene |
1
|
2 pieces; one piece has severe calcific atherosclerosis with narrowing of the lumen, second is 10% vessel and predominantly fat/fibrous/nerve
|
Unacceptable
|
 |
GTEX-132Q8
|
61-70
|
Male
|
GTEX-132Q8-2526 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; several pieces include residual autolyzed mucosa (not target)
|
Unacceptable
|
 |
GTEX-132Q8
|
61-70
|
Male
|
GTEX-132Q8-2626 |
Ileum
|
PAXgene |
3
|
7 pieces; fragments of autolyzed mucosa, muscularis, and only rare lymphoid follicle (target)
|
Unacceptable
|
 |
GTEX-1339X
|
41-50
|
Male
|
GTEX-1339X-0926 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; all pieces severely scarred with virtually no normal glomeruli, tubules or blood vessels; 'thyroidization'; severe vascular sclerosis; 4 pieces contain renal cell neoplasms up to 2 mm in diameter (annotated).
|
Unacceptable
|
 |
GTEX-1339X
|
41-50
|
Male
|
GTEX-1339X-1526 |
Ileum
|
PAXgene |
1
|
6 pieces; only 1 piece contains lymphoid tissue; better suited for LCM
|
Unacceptable
|
 |
GTEX-1339X
|
41-50
|
Male
|
GTEX-1339X-2026 |
Prostate
|
PAXgene |
1
|
2 pieces; 1 is mainly prostatic urethra and periurethral ducts; other contains skeletal muscle and fibrous tissue
|
Unacceptable
|
 |
GTEX-1399Q
|
41-50
|
Male
|
GTEX-1399Q-1226 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; admixture of smooth muscle and skeletal muscle, two pieces with 10-20% attached fat
|
Unacceptable
|
 |
GTEX-1399Q
|
41-50
|
Male
|
GTEX-1399Q-2226 |
Ileum
|
PAXgene |
2
|
4 pieces; fragments of autolyzed mucosa, muscularis, and fat; no lymphoid tissue
|
Unacceptable
|
 |
GTEX-1399R
|
21-40
|
Male
|
GTEX-1399R-1526 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces; lip and skeletal muscle, no glands
|
Unacceptable
|
 |
GTEX-1399T
|
61-70
|
Male
|
GTEX-1399T-1726 |
Ileum
|
PAXgene |
3
|
5 pieces; autolyzed and congested mucosa with one lymphoid nodule (outlined)
|
Unacceptable
|
 |
GTEX-139D8
|
21-40
|
Female
|
GTEX-139D8-0126 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces NOT nerve; blood vessel.
|
Unacceptable
|
 |
GTEX-139D8
|
21-40
|
Female
|
GTEX-139D8-1726 |
Lung
|
PAXgene |
3
|
2 pieces; completely hemorrhagic; tissue autolyzed; consistent with pulmonary embolism
|
Unacceptable
|
 |