GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-0826 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, confirmed target muscularis
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-0926 |
Stomach
|
PAXgene |
3
|
6 pieces, target mucosa up to ~0.9mm, advanced autolysis, sloughing
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1026 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, micronodular goitre
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1126 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, ~40% target muscularis, ~60% mucosa/stroma/fat.
|
Unacceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1226 |
Ileum
|
PAXgene |
1
|
6 pieces, mainly mucosa/muscularis, only trace target lymphoid aggregates
|
Unacceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1326 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, mucosa up to ~0.35mm, 10-15% thickness
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1426 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, fibroadipose elements only
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1526 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, squamous epithelium is ~50 microns; minimal dermal fat
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1626 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces, ~50% glandular parenchyma; delineated; rest is stroma/squamous mucosa; sample with care
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1726 |
Skin, leg
|
PAXgene |
0
|
6 pieces, squamou epithelium is ~50 microns; adherent dermal fat nubbins up to ~2mm, rep delineated
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1826 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, foci of Monckeberg medial sclerosis present; rep delineated
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-1926 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, minmal adherent fat, focally up to 0.5mm
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-2026 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, interstitial fat/vascular elments up to ~25% of tissue, rep delineated
|
Acceptable
|
 |
GTEX-1IDJC
|
51-60
|
Male
|
GTEX-1IDJC-2126 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 60% fat (rep delineated); rest is fascia/connective elements; sample carefully
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-0126 |
Pancreas
|
PAXgene |
1
|
2 pieces; well preserved parenchyma with Langerhans islets (rep outlined); 30% and 5% internal/external fat
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-0226 |
Atrial appendage
|
PAXgene |
1
|
2 pieces; ~50% and ~40% internal fat
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-0326 |
Aorta
|
PAXgene |
1
|
6 pieces; up to 0.8mm rim of adherent adventitia
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-0426 |
Coronary artery
|
PAXgene |
1
|
2 pieces; one well trimmed; other with 1.5mm adherent fat
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-0526 |
Heart
|
PAXgene |
1
|
2 pieces; focal interstitial fibrosis (outlined); autolyzed fatty degeneration (arrows)
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-0626 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; focal fibrosis/scarring (arrows)
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-0726 |
Spleen
|
PAXgene |
1
|
2 pieces; congestion
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-0826 |
Lung
|
PAXgene |
1
|
2 pieces; congestion and collapsed alveolar spaces containing exfoliated alveolar epithelial cells; larger vessels included (arrows)
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-0926 |
Omentum
|
PAXgene |
1
|
2 pieces; lobulated mature adipose tissue
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-1026 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; fibroadipose tissue devoid of ductal structures
|
Acceptable
|
 |
GTEX-1IDJD
|
21-40
|
Male
|
GTEX-1IDJD-1126 |
Skin, leg
|
PAXgene |
1
|
6 pieces;~47 micron thick epidermis; ~10% periadnexal fat (arrows)
|
Acceptable
|
 |