GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-1626 |
Omentum
|
PAXgene |
1
|
2 pieces; mild scattered inflammatory cell infiltrate [history of ascites]
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-1726 |
Pancreas
|
PAXgene |
3
|
2 pieces; severe autolysis; 20% & 40% intralobular fat
|
Unacceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-1826 |
Spleen
|
PAXgene |
2
|
2 pieces; focal congestion
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-1926 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; moderate to severe autolysis; 10% & 20% external fat
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; tubules & ducts severely autolyzed; glomeruli preserved; moderate interstitial fibrosis; no notable vascular lesions
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2126 |
Stomach
|
PAXgene |
2
|
6 pieces; mucosa severely autolyzed; muscularis moderately autolyzed; specimen of limited value; exogenous crystals (probably medication) in mucosa (arrowed)
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2226 |
Ileum
|
PAXgene |
3
|
4 pieces; scattered lymphoid nodules in severely autolyzed stroma with muscularis; LCM
|
Unacceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2326 |
Testis
|
PAXgene |
3
|
2 fragmented pieces; severe fibrosis, hyalinization, autolysis and no obvious spermatogenesis
|
Unacceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2426 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; mucosa autolyzed, muscularis intact
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2526 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; up to 50% perimuscular [submucosal and subserosal] stroma
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2626 |
Prostate
|
PAXgene |
2
|
2 pieces; glands autolyzed; stroma, which is predominant, intact
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2726 |
Brain - cerebellum
|
PAXgene |
2
|
5 fragmented pieces; meninges present [circled]
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2826 |
Brain - cortex
|
PAXgene |
2
|
4 pieces
|
Acceptable
|
 |
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-2926 |
Pituitary gland
|
PAXgene |
2
|
1 piece; mostly adenohypophysis; 10% is neural [circled]
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces; mostly well trimmed, few with up to ~10% primarily internal fat, epidermis measures 35 microns
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; fat with <10% fibrous component
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0326 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; include 10-30% internal/attached fat
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0426 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; predominantly fat with 10-20% interspersed fibrous tissue and nerve, no ductal elements in this section, central defect in one piece (?poor fixation)
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0526 |
Omentum
|
PAXgene |
1
|
2 pieces; lobulated mature fat
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0626 |
Lung
|
PAXgene |
2
|
2 pieces; collapse and congestion, includes some larger vessels/cartilage, sloughed bronchial cells, one piece include pleura (target is 1cm below pleura)
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0726 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; some fibrosis and nodularity with dispersed lymphocytic infiltrates
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0826 |
Heart
|
PAXgene |
1
|
2 pieces; patchy eosinophilia and few foci of scar, trivial component of fat
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-0926 |
Aorta
|
PAXgene |
1
|
6 pieces; atherosclerosis
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-1026 |
Liver
|
PAXgene |
1
|
2 pieces; central congestion, some fibrosis
|
Acceptable
|
 |
GTEX-1IDFM
|
61-70
|
Male
|
GTEX-1IDFM-1126 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; epithelium is sloughing, one piece includes small portion of muscularis (not target)
|
Acceptable
|
 |