GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1226 |
Stomach
|
PAXgene |
1
|
6 pieces, abundant well-preserved mucosa up to ~1mm, 50-100% of thickness
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1326 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, gastric mucosa, not correct target
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1426 |
Ileum
|
PAXgene |
1
|
6 pieces, mucosa/muscularis, less than 5% lymphoid aggregates
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, mucosa well preserved up to ~0.4mm, ~10-20% thickness
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1626 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, mainly muscularis, ~20% 'contaminant' mucosa
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1726 |
Testis
|
PAXgene |
1
|
2 pieces, no abnormalities
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1826 |
Prostate
|
PAXgene |
1
|
2 pieces, galndular hyperplasia
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1926 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, focal peripheral nerve, delineated
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-2026 |
Skin, leg
|
PAXgene |
0
|
6 pieces, minimal fat, squamous epithelium is ~60 microns
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-2126 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, muscular artery, not obvious switch, not GTEx target tissue
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-2226 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, confirmed artery, adherent rim of fibrous tissue up to ~0.4mm
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-2326 |
Aorta
|
PAXgene |
1
|
6 pieces, atherosis up to ~1mm, focally calcified adherent hemorrhagic fat/serosa
|
Acceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-2426 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, ~10 % fascia, rep delineated
|
Acceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0126 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces; fat and abundant dense fibrocollagenous stroma with multiple ducts and lobules with sloughing lining. Focal proliferation and microcalcification
|
Acceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0226 |
Thyroid gland
|
PAXgene |
3
|
2 pieces; variably sized follicles, focal collections of lymphocytes
|
Acceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0326 |
Lung
|
PAXgene |
2
|
2 pieces; congestion, intra-alveolar hemorrhage/edema
|
Acceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; full thickness sections, extensive autolysis
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0526 |
Liver
|
PAXgene |
2
|
2 pieces; congestion
|
Acceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0626 |
Ileum
|
PAXgene |
3
|
4 pieces; good lymphoid component, but too autolyzed
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0726 |
Stomach
|
PAXgene |
3
|
6 pieces; full thickness sections, mucosa (3), muscularis (2)
|
Acceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0826 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; epithelium partially sloughed
|
Acceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0926 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; skeletal muscle indicating sampling of upper esophagus
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-1026 |
Omentum
|
PAXgene |
1
|
2 pieces; mature fat
|
Acceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-1126 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; predominantly muscularis, few pieces include residual autolyzed mucosa (marked)
|
Acceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-1226 |
Aorta
|
PAXgene |
2
|
6 pieces; some atherosclerosis
|
Acceptable
|
 |