GTEX-1I1GS
|
61-70
|
Male
|
GTEX-1I1GS-1726 |
Adrenal glands
|
PAXgene |
3
|
2 pieces, ~60-70% fat, rest is badly autolyzed cortex
|
Unacceptable
|
|
GTEX-1I1GS
|
61-70
|
Male
|
GTEX-1I1GS-2526 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces, ~30% glandular elements; rest is stroma/fat
|
Unacceptable
|
|
GTEX-1I1GS
|
61-70
|
Male
|
GTEX-1I1GS-2826 |
Ileum
|
PAXgene |
3
|
6 pieces, 5-10% lymphoid aggregates, advanced autolysis
|
Unacceptable
|
|
GTEX-1I1GU
|
41-50
|
Male
|
GTEX-1I1GU-1626 |
Ileum
|
PAXgene |
1
|
6 pieces; only 2 small [0.5mm] lymphoid nodules in otherwise well preserved ileal mucosa. LCM
|
Unacceptable
|
|
GTEX-1I1GU
|
41-50
|
Male
|
GTEX-1I1GU-1726 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; all with muscularis propria, 2 with minute [1mm] pieces of mucosa
|
Unacceptable
|
|
GTEX-1I1GU
|
41-50
|
Male
|
GTEX-1I1GU-1826 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; all full thickness (with mucosa) rather than muscularis only
|
Unacceptable
|
|
GTEX-1I1HK
|
61-70
|
Male
|
GTEX-1I1HK-1426 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; fat/fibrous tissue/nerve/vessels, not muscularis
|
Unacceptable
|
|
GTEX-1I1HK
|
61-70
|
Male
|
GTEX-1I1HK-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; submucosa, muscularis mucosae vs propria, no significant intact epithelium
|
Unacceptable
|
|
GTEX-1I1HK
|
61-70
|
Male
|
GTEX-1I1HK-1826 |
Ileum
|
PAXgene |
2
|
6 pieces; full thickness sections (muscularis not target), lymphoid nodules are scattered and variably preserved
|
Unacceptable
|
|
GTEX-1I1HK
|
61-70
|
Male
|
GTEX-1I1HK-1926 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; three are full thickness (mucosa not target)
|
Unacceptable
|
|
GTEX-1I4MK
|
51-60
|
Female
|
GTEX-1I4MK-1226 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, 4 have mucosa as well as muscle; LCM
|
Unacceptable
|
|
GTEX-1I4MK
|
51-60
|
Female
|
GTEX-1I4MK-1826 |
Ileum
|
PAXgene |
1
|
6 pieces; abundant lymphoid tissue; muscularis propria present in all pieces; LCM
|
Unacceptable
|
|
GTEX-1I6K6
|
21-40
|
Male
|
GTEX-1I6K6-1426 |
Stomach
|
PAXgene |
0
|
6 pieces; muscularis, no mucosa
|
Unacceptable
|
|
GTEX-1I6K6
|
21-40
|
Male
|
GTEX-1I6K6-1626 |
Ileum
|
PAXgene |
2
|
6 pieces; muscularis (not target) and partially autolyzed mucosa, 3 pieces have good lymphoid component
|
Unacceptable
|
|
GTEX-1I6K7
|
41-50
|
Male
|
GTEX-1I6K7-0726 |
Coronary artery
|
PAXgene |
1
|
2 pieces; 1 all fat; other 90% fibrofatty tissue with small vein & very small artery
|
Unacceptable
|
|
GTEX-1I6K7
|
41-50
|
Male
|
GTEX-1I6K7-2026 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; muscularis and fat without significant amount of mucosa
|
Unacceptable
|
|
GTEX-1I6K7
|
41-50
|
Male
|
GTEX-1I6K7-2126 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; mucosa present on most pieces; muscularis on all
|
Unacceptable
|
|
GTEX-1I6K7
|
41-50
|
Male
|
GTEX-1I6K7-2226 |
Ileum
|
PAXgene |
2
|
6 pieces; full thickness ileum with no lymphoid deposits
|
Unacceptable
|
|
GTEX-1ICG6
|
61-70
|
Female
|
GTEX-1ICG6-0326 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; only 1 of 6 contains cortex [arrowed]; others are medulla
|
Unacceptable
|
|
GTEX-1ICG6
|
61-70
|
Female
|
GTEX-1ICG6-0826 |
Coronary artery
|
PAXgene |
0
|
2 pieces; 1 piece contains a vein, myocardium and fat; other is largely fat with veins and a small <1mm artery [all labeled]
|
Unacceptable
|
|
GTEX-1ICG6
|
61-70
|
Female
|
GTEX-1ICG6-2326 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; duodenum not colon
|
Unacceptable
|
|
GTEX-1ICG6
|
61-70
|
Female
|
GTEX-1ICG6-2426 |
Ileum
|
PAXgene |
1
|
6 pieces; colon not ileum
|
Unacceptable
|
|
GTEX-1ICLY
|
51-60
|
Male
|
GTEX-1ICLY-2526 |
Ileum
|
PAXgene |
3
|
6 pieces, muscularis, sloughed mucosa. Insufficient target lymphoid aggregates
|
Unacceptable
|
|
GTEX-1ICLY
|
51-60
|
Male
|
GTEX-1ICLY-2726 |
Colon, sigmoid
|
PAXgene |
3
|
6 pieces, minimal target muscularis, mainly autolyzed mucosa and stroma
|
Unacceptable
|
|
GTEX-1ICLZ
|
61-70
|
Male
|
GTEX-1ICLZ-1326 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces; completely sloughed epithelium; moderately autolyzed muscularis mucosae and submucosa with mucous glands
|
Unacceptable
|
|