GTEX-RU1J
|
21-40
|
Female
|
GTEX-RU1J-0626 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 11x10 & 10x10 mm; 50 & 70% adipose tissue; abundant lobular and ductal components; unfixed central areas in adipose tissue
|
Acceptable
|
 |
GTEX-RU1J
|
21-40
|
Female
|
GTEX-RU1J-0726 |
Urinary bladder
|
PAXgene |
1
|
6 pieces up to 8x5 mm; surface focally present in 5 of 6 pieces (maximum length 3.7 mm)
|
Acceptable
|
 |
GTEX-RU1J
|
21-40
|
Female
|
GTEX-RU1J-1226 |
Cervix - endocervix
|
PAXgene |
0
|
2 pieces, 9x6 & 8x7 mm; 1 piece with squamous high grade dysplasia (11 mm in length); 1 piece without epithelium;
|
Acceptable
|
 |
GTEX-RU1J
|
21-40
|
Female
|
GTEX-RU1J-1626 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 15x12 & 10x8 mm; large central defects especially in larger piece
|
Acceptable
|
 |
GTEX-RU1J
|
21-40
|
Female
|
GTEX-RU1J-1826 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces ~1.6 mm in diameter; 60 & 40% adjacent adipose and fibrous stroma
|
Acceptable
|
 |
GTEX-RU1J
|
21-40
|
Female
|
GTEX-RU1J-1926 |
Artery - tibial
|
PAXgene |
0
|
2 pieces 2 mm in diameter; normal arteries minimal adipose tissue
|
Acceptable
|
 |
GTEX-RUSQ
|
51-60
|
Male
|
GTEX-RUSQ-0326 |
Aorta
|
PAXgene |
1
|
6 pieces, ~9x2mm. Several with layer of atherosis, up to 0.5mm in areas
|
Acceptable
|
 |
GTEX-RVPV
|
61-70
|
Male
|
GTEX-RVPV-1126 |
Testis
|
PAXgene |
2
|
2 pieces, 13x6 &11x9 mm; spermatogenesis; 4x3 mm rete testis at one pole; 3x1.5 mm capsule in other piece
|
Acceptable
|
 |
GTEX-RVPV
|
61-70
|
Male
|
GTEX-RVPV-2326 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 9x5 & 6x3 mm; ~50-70% adipose in and around nerves
|
Acceptable
|
 |
GTEX-RWS6
|
61-70
|
Female
|
GTEX-RWS6-1126 |
Pancreas
|
PAXgene |
1
|
2 pieces, 9x8 & 8x7 mm; ~20-40% adipose in and around parenchyma
|
Acceptable
|
 |
GTEX-RWS6
|
61-70
|
Female
|
GTEX-RWS6-2026 |
Skin, leg
|
PAXgene |
1
|
6 pieces up to 8x4 mm; large holes in the dermis of the thicker pieces (unfixed?)
|
Acceptable
|
 |
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-0526 |
Artery - tibial
|
PAXgene |
0
|
2 aliquots, ~1.5mm in d. Good, clean specimens, no adherent fat
|
Acceptable
|
 |
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1026 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 aliquots, ~7x7mm. Single minute ductal unit noted, ~100 microns in d.
|
Acceptable
|
 |
GTEX-RWSA
|
41-50
|
Male
|
GTEX-RWSA-1526 |
Pancreas
|
PAXgene |
2
|
2 aliquots, ~6.5x6mm. Badly autolyzed, saponfication. LCACC ALERT: ~30% of one aliquot is all fat (circled in pink)
|
Acceptable
|
 |
GTEX-S32W
|
51-60
|
Female
|
GTEX-S32W-0826 |
Pancreas
|
PAXgene |
1
|
2 pieces 13x6 & 11x7 mm; good preservation; focal scarring; 50% peripheral adipose in one, 40% peripheral and internal adipose in the other
|
Acceptable
|
 |
GTEX-S32W
|
51-60
|
Female
|
GTEX-S32W-1926 |
Liver
|
PAXgene |
1
|
2 pieces 10x7 & 8x7 mm; large area of hemorrhage in each: 10 and 25% of specimen
|
Acceptable
|
 |
GTEX-S33H
|
21-40
|
Male
|
GTEX-S33H-0326 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces 9x9 & 8x7 mm; several foci of mammary ducts in abundant fibroadipose tissue
|
Acceptable
|
 |
GTEX-S33H
|
21-40
|
Male
|
GTEX-S33H-2126 |
Colon, transverse
|
PAXgene |
2
|
6 pieces up to 9x2 mm; mucosa on all (but autolyzed); muscularis varies in extent; submucosa heavily adiposed
|
Acceptable
|
 |
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0226 |
Thyroid gland
|
PAXgene |
1
|
2 aliquots, ~ 9xx8mm. Microglandular adenomatoid nodule in squares; focal skeletal muscle encircled. LDACC ALERT
|
Acceptable
|
 |
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-0326 |
Lung
|
PAXgene |
1
|
2 aliquots, ~ 9x6mm. Mild congestion; prominent mucoid secretions in bronchus
|
Acceptable
|
 |
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1226 |
Vagina
|
PAXgene |
1
|
6 pieces, ~ 5x4mm, squamous mucosa is ~ 2-3% of thickness, present at least focally in 5 of 6 aliquots
|
Acceptable
|
 |
GTEX-S341
|
41-50
|
Female
|
GTEX-S341-1826 |
Muscle, skeletal
|
PAXgene |
0
|
2 aliquots, ~ 8x5mm. 2.5x1mm focus of fibrous tissue in one, encircled. Minimal interstitial fat
|
Acceptable
|
 |
GTEX-S3XE
|
51-60
|
Male
|
GTEX-S3XE-1926 |
Nerve - tibial
|
PAXgene |
1
|
4 pieces up to 11x5 mm; ~30% adipose in and around nerve bundles
|
Acceptable
|
 |
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces 9x8 & 13x10 mm; large ducts, no lobules; 80-90% adipose; central unfixed adipose especially in large piece
|
Acceptable
|
 |
GTEX-S4P3
|
51-60
|
Female
|
GTEX-S4P3-1726 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces ~5mm in diameter; one with 30% surrounding adipose, other 'clean' ;
|
Acceptable
|
 |