GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 10x2mm; squamous mucosa is ~10-15% of thickness
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1726 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 10x2mm; mucosa is 90--100% of thickness, remarkably pure but moderately autolyzed
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1826 |
Ileum
|
PAXgene |
2
|
6 pieces, up to 11x2mm; actually ileum, lymphoid elements are ~15% of specimen
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1926 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 7x3mm all colonic mucosa; 80-90% thickness is mucosa, moderately - severely autolyzed
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 10x3mm; ~50% badly autolyzed mucosa, rest is muscle & fat
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2126 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 16x13 & 17x12mm; mainly fibroadipose tissue, a few atrophic ductal elements noted, rep ones delineated
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2226 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces, 16x10 & 18x9mm; largely squamous mucosa (inner lip) and stroma, minute glands are <5% tissue volume
|
Unacceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2326 |
Skin, leg
|
PAXgene |
0
|
6 pieces, up to 12x2.5mm; squamous epithelium is ~1-2% thickness
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2426 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 12x11 & 15x7.5mm; ~19% fibrous tissue, delineated
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2526 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 9x9 & 9x7mm; <1% interstitial fat
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2626 |
Nerve - tibial
|
PAXgene |
0
|
4 pieces, up to 6x5mm; good clean specimens
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2726 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, 3x2.5 & 4x3mm; one aliquot has ~0.5mm nubbin of adherent fat/fibrous tissue
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0126 |
Spleen
|
PAXgene |
1
|
2 pieces, 8x8 & 9x7mm; moderate congestion
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0226 |
Lung
|
PAXgene |
1
|
2 pieces, 8x7 & 8x6.5mm; focal emphysema
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0326 |
Coronary artery
|
PAXgene |
1
|
2 pieces, 2x2 & 3x2.5mm; no significant plaques
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0426 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 8x2mm; well dissected; flat plaques
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0526 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 8x7 & 7.5x6mm; a few small focal lymphoid collections
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0626 |
Omentum
|
PAXgene |
0
|
2 pieces, 11x8 & 11x8mm; no holes
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0726 |
Pancreas
|
PAXgene |
0
|
2 pieces, 9x8 & 8x7mm; 40-50% adipose, internal and external; 1 duct has mucinous metaplasia
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0826 |
Heart
|
PAXgene |
1
|
2 pieces, 10x7 & 9x7mm; 1 is 80% external adipose; other has 10% internal adipose; hypertrophied fibers
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-0926 |
Atrial appendage
|
PAXgene |
0
|
2 pieces, 8x8 & 8x7.5mm; entirely adipose tissue, no muscle
|
Unacceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x2mm; well dissected
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1126 |
Esophagus - muscularis
|
PAXgene |
0
|
6 pieces, up to 7x5mm; well dissected; prominent focus of ganglion cell marked
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1226 |
Gastroesophageal junction
|
PAXgene |
0
|
6 pieces, up to 6x3.5mm; 10, 30, & 60% periesophageal stroma in 3 pieces.
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1326 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 9x3mm; foveolar (surface) glands autolyzed; only 1 of 6 has muscularis
|
Acceptable
|
|