GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1126 |
Atrial appendage
|
PAXgene |
2
|
2 pieces 10.5x7 & 10x7mm;
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1226 |
Heart
|
PAXgene |
2
|
2 pieces 9x6.5 & 8x6.5mm; poorly preserved, apparent fibrotic focus
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 7x3mm; squamous mucosa ~15% thickness
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1426 |
Esophagus - muscularis
|
PAXgene |
2
|
6 pieces up to 8x3mm; more poorly preserved than usual
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1526 |
Spleen
|
PAXgene |
3
|
2 pieces 8x6 & 8x7mm;
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1626 |
Pancreas
|
PAXgene |
3
|
2 pieces 9x9 & 9x8mm; ~50% parenchyma, badly autolyzed, extensive interstitial fat
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1726 |
Adrenal glands
|
PAXgene |
3
|
2 pieces 9x7 & 8x6mm; All cortex, badly autolzyed
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1826 |
Liver
|
PAXgene |
2
|
2 pieces 8x6 & 7x7mm; minimal steatosis
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1926 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces up to 8x3mm ~600 fat/fibrosis, where present cortex badly fibroitic c/w history polycystic kidney disease. Not appropriate for GTEx; so 'unacceptable', save for potential future study but badly autolyzed
|
Unacceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2026 |
Stomach
|
PAXgene |
3
|
6 pieces up to 9x3.5mm; mucosa ~30-40% thickness but badly autolyzed
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2126 |
Ileum
|
PAXgene |
3
|
4 pieces up to 4x3mm; badly autolyzed. Lymphoid aggregates <5%
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2226 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces up to 8.5x3mm; all muscularis
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2326 |
Colon, transverse
|
PAXgene |
3
|
6 pieces up to 8x3mm; mucosa badly autolyzed, ~10% thickness
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2426 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces up to 8x4mm; squamous epithelium appears atrophic
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2526 |
Omentum
|
PAXgene |
2
|
2 pieces 8x8 & 9x7mm;
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2626 |
Prostate
|
PAXgene |
3
|
2 pieces 9x9 & 9x8mm; glands badly autolyzed
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2726 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces up to 8x4mm; muscle more poorly preserved than usual
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2826 |
Brain - cerebellum
|
PAXgene |
1
|
4 pieces up to 6x3mm; anoxic changes
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2926 |
Brain - cortex
|
PAXgene |
1
|
4 pieces up to 6x5mm;
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-3026 |
Pituitary gland
|
PAXgene |
1
|
1 piece 15x6mm; 50% neurohypophysis; delineated
|
Acceptable
|
|
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-0126 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 7.5x3mm; well trimmed, no subcutaneous adipose
|
Acceptable
|
|
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 8.5x8 & 10x7.5mm; 1 piece has focal calcification and possible ossification; other has 50% blood vessels
|
Acceptable
|
|
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-0326 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 5x4 & 7x3mm; 20% peripheral adipose
|
Acceptable
|
|
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-0426 |
Artery - tibial
|
PAXgene |
2
|
2 pieces, 2.5x2.5 & 3x2mm; severe occlusive atherosclerosis; medial calcification
|
Acceptable
|
|
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-0526 |
Muscle, skeletal
|
PAXgene |
2
|
2 pieces, 9x8 & 10x9mm; patchy atrophy (ischemic probably)
|
Acceptable
|
|