GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-2326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces, up to 7.5x3mm; squamous mucosa poorly preserved and sloughing, ~10% thickness where present
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-1326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 7x3mm; squamous mucosa ~15% thickness
|
Acceptable
|
|
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces, up to 6x2mm; epithelium partially sloughed.
LDACC note: esophagus epithelium is normally about 10% of the mucosal thickness; muscle and stroma make up the rest.
|
Acceptable
|
|
GTEX-XMD3
|
51-60
|
Female
|
GTEX-XMD3-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces. up to 7x2mm; well dissected mucosa
|
Acceptable
|
|
GTEX-XMK1
|
41-50
|
Male
|
GTEX-XMK1-1326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces. up to 7x3mm;
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-1926 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces. up to 5.5x2mm; superficially sloughed epithelium
|
Acceptable
|
|
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2126 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces. up to 6x2mm; squamous mucosa is ~10% thickness.
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-0526 |
Esophagus - mucosa
|
PAXgene |
1
|
2pieces fibroadipose tissue, uncertain provenance.
|
Unacceptable
|
|
GTEX-XPVG
|
51-60
|
Male
|
GTEX-XPVG-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 8x5mm; 5 with squamous and glandular mucosa; 1 all glandular
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-1126 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x2mm; squamous mucosa ~20 % ot thickness
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x3mm; well dissected, superficial surface sloughed
|
Acceptable
|
|
GTEX-XUJ4
|
61-70
|
Female
|
GTEX-XUJ4-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 8x5mm; squamous mucosa up to ~20% thickness
|
Acceptable
|
|
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-1426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x3mm; well dissected; surface sloughing, severe in 1 piece
|
Acceptable
|
|
GTEX-XUZC
|
21-40
|
Female
|
GTEX-XUZC-0426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 13x3mm; squamous mucosa well-preserved, ~25% thickness
|
Acceptable
|
|
GTEX-XV7Q
|
41-50
|
Female
|
GTEX-XV7Q-1126 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 10x5mm; ~40% squamous mucosa,
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-0326 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 5.5x5mm; squamous mucosa, well-preserved, ~10-15% thickness
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
5 pieces, up to 8x3mm; all have mucosa
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-1626 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces, up to 6x5mm; well dissected mucosa
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0926 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x4mm; squamous mucosa 10-15% thickness, submucosal glands abundant, rep. ones encircled
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x3mm; squamous mucosa ~15% thickness
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1126 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 8x2mm. Well dissected; some mechanical disruption.
|
Acceptable
|
|
GTEX-Y5LM
|
41-50
|
Female
|
GTEX-Y5LM-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces. up to 9.5x4mm; Well dissected.
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 10x2mm; squamous mucosa is ~10-15% of thickness
|
Acceptable
|
|
GTEX-Y5V6
|
61-70
|
Male
|
GTEX-Y5V6-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x2mm; well dissected
|
Acceptable
|
|
GTEX-Y8E4
|
41-50
|
Male
|
GTEX-Y8E4-1726 |
Esophagus - mucosa
|
PAXgene |
1
|
1 piece, 6x2 mm. similar to 1725, less inflammation, less desquamation (less handling). Well trimmed.
|
Acceptable
|
|