GTEX-XGQ4
|
41-50
|
Male
|
GTEX-XGQ4-1226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 8x5m; ~10-20% thickness is mucosa, fairly well preserved
|
Acceptable
|
|
GTEX-XK95
|
41-50
|
Male
|
GTEX-XK95-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 8x2mm; Mucosa=3; muscularis=2 (autolysis)
|
Acceptable
|
|
GTEX-XLM4
|
61-70
|
Male
|
GTEX-XLM4-1726 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 8x2mm; mucosa sloughing/autolyzed
|
Acceptable
|
|
GTEX-XMD1
|
61-70
|
Male
|
GTEX-XMD1-2326 |
Colon, transverse
|
PAXgene |
3
|
6 pieces up to 8x3mm; mucosa badly autolyzed, ~10% thickness
|
Acceptable
|
|
GTEX-XMD2
|
61-70
|
Female
|
GTEX-XMD2-2526 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 6x2.5mm; mucosa=3; muscle =1.
|
Acceptable
|
|
GTEX-XMD3
|
51-60
|
Female
|
GTEX-XMD3-2826 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 5x2mm; mucosa=3; muscularis=2
|
Acceptable
|
|
GTEX-XMK1
|
41-50
|
Male
|
GTEX-XMK1-1726 |
Colon, transverse
|
PAXgene |
1
|
6 pieces. up to 10x4mm; mucosa is ~10% thickness, reasonably well preserved but superficially sloughed
|
Acceptable
|
|
GTEX-XOT4
|
61-70
|
Female
|
GTEX-XOT4-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 7x2mm; mucosa=3; muscle= 2.
|
Acceptable
|
|
GTEX-XOTO
|
51-60
|
Male
|
GTEX-XOTO-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces. up to 9x4mm; Mucosa delineated in one aliquot, ~10% thickness but badly autolyzed
|
Acceptable
|
|
GTEX-XPT6
|
21-40
|
Male
|
GTEX-XPT6-1126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces ~6x4mm, 5 with mucosa, well preserved, up to 15% thickness
|
Acceptable
|
|
GTEX-XPVG
|
51-60
|
Male
|
GTEX-XPVG-1826 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 11x4mm; 3 with good mucosa; 4 with muscularis; 1 with only adipose
|
Acceptable
|
|
GTEX-XQ3S
|
21-40
|
Male
|
GTEX-XQ3S-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 8.5x2mm; mucosa badly autolyzed, sloughed
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 8x2mm; mucosa superficially sloughed otherwise well preserved; lymphoid nodules annotated
|
Acceptable
|
|
GTEX-XUJ4
|
61-70
|
Female
|
GTEX-XUJ4-2026 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 9x2mm; muscosa well preserved, ~30% thickness
|
Acceptable
|
|
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-1926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 9x4mm. Well trimmed full thickness specimen. Slight surface sloughing.
|
Acceptable
|
|
GTEX-XUZC
|
21-40
|
Female
|
GTEX-XUZC-1326 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 8x2mm; mucosa well preserved ~20% thickness
|
Acceptable
|
|
GTEX-XV7Q
|
41-50
|
Female
|
GTEX-XV7Q-2126 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, up to 8x1.5mm; mucosa partially sloughed
|
Acceptable
|
|
GTEX-XXEK
|
51-60
|
Male
|
GTEX-XXEK-1926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 9x6mm; mainly muscularis and fat, less than 3% mucosa, well preserved, delineated
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2226 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, up to 10x5.5mm; 5 have mucosa
|
Acceptable
|
|
GTEX-Y111
|
41-50
|
Male
|
GTEX-Y111-1426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 9x2.5mm. All have severely autolyzed mucosa; 3 have moderately autolyzed muscularis. 3 without muscularis
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 9.5x4mm; mucosa well preserved, mucosa ~5-10% thickness
|
Acceptable
|
|
GTEX-Y3I4
|
51-60
|
Male
|
GTEX-Y3I4-1426 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 12x4.5mm; mucosa well preserved, ~15% of thickness
|
Acceptable
|
|
GTEX-Y3IK
|
51-60
|
Female
|
GTEX-Y3IK-1826 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, up to 11x2mm. All have only mucosa-submucosa; transverse colon should contain muscularis propria.
|
Acceptable
|
|
GTEX-Y5LM
|
41-50
|
Female
|
GTEX-Y5LM-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces. up to 12x3mm; Only 1 of 6 has muscularis. Transverse colon sample should have full thickness of wall.
|
Acceptable
|
|
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 10x3mm; ~50% badly autolyzed mucosa, rest is muscle & fat
|
Acceptable
|
|