GTEx Histological Images
Displaying 25 of 1198 results.
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| Case ID | Age | Gender | Specimen ID | Tissue Type | Fixative | Autolysis | Pathology Review Comments | Acceptability | Action |
| GTEX-PWO3 | 61-70 | Female | GTEX-PWO3-0626 | Colon, transverse | PAXgene | 3 | 6 ~9x2mm pieces. Mucosa sloughed in >50%; where present, badly autolyzed, score three, ~10% of thickness. Areas of poor/under-fixation | Acceptable |  |
| GTEX-PWO3 | 61-70 | Female | GTEX-PWO3-0726 | Kidney - medulla | PAXgene | 3 | 2 ~10x8mm aliquots. Contaminant glomeruli in one aliquot, ~40%. Chronic/fibrosing intersitital nephritis; focal areas of ‘thyroidization’. | Acceptable | |
| GTEX-PWOO | 41-50 | Female | GTEX-PWOO-0526 | Heart | PAXgene | 1 | 2 ~7x6mm aliquots. Contraction band ischemic changes noted; focal fat in one aliquot | Acceptable | |
| GTEX-PWOO | 41-50 | Female | GTEX-PWOO-1026 | Esophagus - muscularis | PAXgene | 1 | 6 ~7x3.5mm pieces. Single 0.6mm focus of sub mucosa mucous/serous glands noted in one piece | Acceptable | |
| GTEX-PWOO | 41-50 | Female | GTEX-PWOO-1426 | Urinary bladder | PAXgene | 1 | 6 pieces, urothelium sparse and ~ 1% of thickness where visible (focal in 3of 6 aliquots, ~7x3.5mm) | Acceptable | |
| GTEX-PX3G | 21-40 | Female | GTEX-PX3G-0326 | Heart | PAXgene | 1 | 2 pieces, about 9mm squared; a 2 mm coronary artery is at 1 edge embedded in <5% fat | Acceptable | |
| GTEX-PX3G | 21-40 | Female | GTEX-PX3G-0626 | Esophagus - mucosa | PAXgene | 1 | 6 pieces, ~6x2 mm, 3 have glandular mucosa in part or total; one shows intestinal metaplasia; several, squamous hyperplasia of reflux type | Acceptable | |
| GTEX-PX3G | 21-40 | Female | GTEX-PX3G-3026 | Coronary artery | PAXgene | 1 | 2 pieces, 2.8mm diameter; 30% atherosclerotic plaque & 30% adipose in one; 20% plaque & <5% adipose in other | Acceptable | |
| GTEX-Q2AH | 21-40 | Male | GTEX-Q2AH-1026 | Esophagus - muscularis | PAXgene | 1 | 5 pieces up to 9x3 mm; numerous tissue tears in mucosa of 4 of 5 aliquots | Acceptable | |
| GTEX-Q2AH | 21-40 | Male | GTEX-Q2AH-1726 | Adipose tissue | PAXgene | 1 | 2 pieces, 14x10 & 16x8mm; largest with central hollow defect; 2 large veins in one aliquot | Acceptable | |
| GTEX-Q2AH | 21-40 | Male | GTEX-Q2AH-1826 | Muscle, skeletal | PAXgene | 1 | 2 pieces , 10x6 & 9x6mm; large tissue tears in one piece | Acceptable | |
| GTEX-Q2AI | 41-50 | Male | GTEX-Q2AI-0426 | Pancreas | PAXgene | 1 | 2 pieces 12x8 & 7x7 mm; ~20% fat in each (included amongst the parenchyma, not outside) | Acceptable | |
| GTEX-Q2AI | 41-50 | Male | GTEX-Q2AI-0826 | Stomach | PAXgene | 1 | 6 pieces up to 8x4.5 mm; good mucosa; many mucosal tissue tears in every piece, doesn’t appear to be poor fixation | Acceptable | |
| GTEX-Q734 | 41-50 | Female | GTEX-Q734-1526 | Cervix - ectocervix | PAXgene | 1 | 2 aliquots ~ 12.5x3mm. Squamous mucosa (keratinizing in foci) is 3-5% of thickness; good specimens | Acceptable | |
| GTEX-Q734 | 41-50 | Female | GTEX-Q734-2126 | Nerve - tibial | PAXgene | 1 | 4 ~4.5x3mm pieces of tendon. Incorrect tissue, not in GTEx list | Unacceptable | |
| GTEX-QDT8 | 21-40 | Female | GTEX-QDT8-0826 | Heart | PAXgene | 1 | 2 ~8x6.5mm aliquots , patchy interstitial fibrosis in each | Acceptable | |
| GTEX-QDT8 | 21-40 | Female | GTEX-QDT8-2326 | Fallopian tube | PAXgene | 2 | 2 ~6x3mm aliquots. Lumen is ~0.4.x0.3mm in the center of each | Acceptable | |
| GTEX-QDVJ | 51-60 | Male | GTEX-QDVJ-1926 | Muscle, skeletal | PAXgene | 1 | 2 pieces; 9x6 & 8x7mm; severe tissue fracture in one piece (histology origin) | Acceptable | |
| GTEX-QDVN | 51-60 | Male | GTEX-QDVN-1326 | Colon, transverse | PAXgene | 2 | 6 ~9x3.5mm pieces; mucosa is ~10-12% thickness, only seen in 4 of 6 pieces | Acceptable | |
| GTEX-QDVN | 51-60 | Male | GTEX-QDVN-1426 | Urinary bladder | PAXgene | 3 | 1 (muscle)-3(urothelium); 6 9.5x6mm pieces; urothelium totally sloughed in places; where present, <1% of thickness | Acceptable | |
| GTEX-QEG4 | 21-40 | Male | GTEX-QEG4-0626 | Muscle, skeletal | PAXgene | 1 | 2 ~10x6mm aliquots; ~5% interstitial adipose tissue in one | Acceptable | |
| GTEX-QEL4 | 51-60 | Male | GTEX-QEL4-0226 | Skin, leg | PAXgene | 1 | 6 ~8x3mm pieces. Squamous epithelium is ~1-2% of thickness. ~1mm layer of subcutaneous fat present in 5 pieces | Acceptable | |
| GTEX-QEL4 | 51-60 | Male | GTEX-QEL4-2126 | Mammary tissue (breast) | PAXgene | 1 | 2 ~9.5x6.5mm aliquots. Ductal elements visible in both | Acceptable | |
| GTEX-QESD | 21-40 | Male | GTEX-QESD-1326 | Mammary tissue (breast) | PAXgene | 1 | 2 pieces of adipose tissue without mammary elements; large central defects in 15x12 & 12x12 mm aliquots; probably poorly fixed | Unacceptable | |
| GTEX-QESD | 21-40 | Male | GTEX-QESD-1526 | Adipose tissue | PAXgene | 1 | 2 pieces, 13x9 & 13x8 mm; large central defects, probably poorly fixed in these large aliquots | Acceptable | |