GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-1426 |
Ovary
|
PAXgene |
1
|
2 pieces; atrophic, corpora albicans, several small cysts
|
Acceptable
|
|
GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-1526 |
Uterus
|
PAXgene |
1
|
2 pieces; small focus of endometrium present (annotated)
|
Acceptable
|
|
GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-1726 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; well trimmed muscle
|
Acceptable
|
|
GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-1826 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; only 2 of 6 are muscularis, 4 are mucosa and submucosa; only useful for TMA or laser capture [annotated]
|
Unacceptable
|
|
GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-2226 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; small amounts of totally autolyzed mucosa delineated; muscle slightly autolyzed
|
Acceptable
|
|
GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-2626 |
Adipose tissue
|
PAXgene |
1
|
2 pieces
|
Acceptable
|
|
GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-2926 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; well trimmed of fat; some perivascular stroma present [annotated]
|
Acceptable
|
|
GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-3026 |
Brain - cerebellum
|
PAXgene |
1
|
3 pieces
|
Acceptable
|
|
GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-3126 |
Brain - cortex
|
PAXgene |
1
|
2 pieces
|
Acceptable
|
|
GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-3226 |
Pituitary gland
|
PAXgene |
1
|
1 piece with anterior and posterior portions
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-0126 |
Adrenal glands
|
PAXgene |
1
|
2 pieces: sample blindly with care: one aliquot is ~20% cortex (delineated), rest fat; other is 90% cortex, well preserved
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-0226 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, no abnormalities
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-0326 |
Aorta
|
PAXgene |
1
|
6 pieces, minimal atherosis
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-0426 |
Spleen
|
PAXgene |
1
|
2 pieces, no abnormalities
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-0526 |
Coronary artery
|
PAXgene |
1
|
2 pieces, mainly fat/myocardium, minute vessel, not sufficient for GTEx use
|
Unacceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-0626 |
Heart
|
PAXgene |
1
|
2 pieces, minimal ischemic damage
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-0726 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, few small lymphoid aggregates, not sufficient for Hashimotos, but may be early stage condition.
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-0826 |
Lung
|
PAXgene |
1
|
2 pieces, mild congestion
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-0926 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, squamous mucosa is ~10% thickness
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-1026 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, all muscularis
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-1126 |
Pancreas
|
PAXgene |
1
|
2 pieces ~20% interstitial fat delineated; Islets well-visualized, rep encircled
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-1226 |
Omentum
|
PAXgene |
1
|
2 pieces, minimal fibrosis
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-1326 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, all muscularis
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-1426 |
Stomach
|
PAXgene |
1
|
6 pieces, fairly well preserved mucosa, ~10-15% thickness, superficial areas approach 'score 2' focally
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-1626 |
Ileum
|
PAXgene |
1
|
6 pieces, all colon, unknown site, not GTEx target
|
Unacceptable
|
|