GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1026 |
Esophagus - muscularis
|
PAXgene |
1
|
6 ~8x2.5mm pieces
|
Acceptable
|
 |
GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1126 |
Colon, transverse
|
PAXgene |
1
|
6 ~8.5x3mm pieces; mucosa is generally well-preserved, ~ 10% of thickness
|
Acceptable
|
 |
GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1226 |
Urinary bladder
|
PAXgene |
1
|
6 ~8.5x4mm pieces; Urothelium variably sloughed, <1% of thickness
|
Acceptable
|
 |
GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1326 |
Prostate
|
PAXgene |
1
|
2 ~11x8.5mm aliquots. Diffuse cystic glandular atrophy and patchy chronic prostatits
|
Acceptable
|
 |
GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1426 |
Testis
|
PAXgene |
1
|
2 ~11x9mm aliquots. Spermatogenesis is present but appears reduced
|
Acceptable
|
 |
GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1526 |
Adipose tissue
|
PAXgene |
1
|
2 ~11x8m aliquots
|
Acceptable
|
 |
GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1626 |
Skin, leg
|
PAXgene |
1
|
6 ~6.5x2.5mm pieces; squamous epithelium is ~1-2% of thickness
|
Acceptable
|
 |
GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1726 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~11x6mm aliquots, <5-10% interstitial fat
|
Acceptable
|
 |
GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1826 |
Nerve - tibial
|
PAXgene |
1
|
2 ~6x4mm aliquots, ~10% interstitial fat
|
Acceptable
|
 |
GTEX-QLQ7
|
61-70
|
Male
|
GTEX-QLQ7-1926 |
Artery - tibial
|
PAXgene |
1
|
2 ~2x1mm aliquots, substantial rims of fat/fibrous tissue around both (up to 1-2mm).
Focal Monckeberg’s medial sclerosis noted
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0126 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~12x7mm aliquots, good clean specimens, <5% interstitial fat
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0226 |
Adipose tissue
|
PAXgene |
1
|
2 ~8x7mm aliquots, extreme separation falsely implies larger dimensions
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0326 |
Nerve - tibial
|
PAXgene |
1
|
2 ~5x3mm aliquots; good clean specimens
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0426 |
Lung
|
PAXgene |
3
|
2 9x7.5mm aliquots. Diffuse infiltrative process, suspect squamous carcinoma/fibrosis. Severe autolysis hampers evaluation; need slides to review
|
Unacceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0526 |
Aorta
|
PAXgene |
1
|
6 ~8.5x1.5mm pieces, some with 0.5-1mm attached fibroadipose tissue on serosal surfaces
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 6.5x3mm pieces. Foci of squamous mucosa, more than above? Switched aliquots?
|
Unacceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0726 |
Esophagus - mucosa
|
PAXgene |
1
|
6 ~6x3mm pieces. Rare minute foci of squamous mucosa
|
Unacceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0826 |
Liver
|
PAXgene |
2
|
2 ~9x8mm aliquots, areas of chronic passive congestion
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0926 |
Spleen
|
PAXgene |
3
|
2 ~10x9mm aliquots, marked congestion of red pulp
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1026 |
Pancreas
|
PAXgene |
3
|
2 ~10x9mm aliquots, marked diffuse saponification/autolysis
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1126 |
Adrenal glands
|
PAXgene |
2
|
2 ~9x8mm aliquots; one is ~85% fat; cannot be used; unable to monitor corresponding aliquot
|
Unacceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1226 |
Pituitary gland
|
PAXgene |
2
|
10x5mm aliquot with 3.5x2mm portion of neuohypophysis appended
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1325 |
Brain - cerebellum
|
PAXgene |
2
|
4 ~6x5mm aliquots
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1426 |
Brain - cortex
|
PAXgene |
2
|
3 ~7x3 mm aliquots; 1 ~4x1.5mm aliquot; 1 ~3.5x3.5mm fragment of dura
|
Acceptable
|
 |
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1526 |
Thyroid gland
|
PAXgene |
2
|
2 ~8x7mm aliquots. Suspect malignancy, ?follicular variant of papillary carcinoma, pending glass review. Autolysis hampers analysis
|
Unacceptable
|
 |