GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-1726 |
Pancreas
|
PAXgene |
2
|
~9x6mm pieces, about 30% fat, moderate postmortem saponification
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-1826 |
Adrenal glands
|
PAXgene |
3
|
2 ~12x3mm pieces, 80% fat. Autolyzed cortex in a ~0.5mm strip along one edge of both aliquots
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-1926 |
Liver
|
PAXgene |
1
|
2 pieces ~7.5x7.5mm. Established micronodular cirrhosis with micro and macrovesicular steatosis and chronic hepatitis
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2026 |
Stomach
|
PAXgene |
3
|
6 pieces, ~6x3.5mm, mucosa is 25-30% of thickness
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2126 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, ~7x2.5mm, mucosa totally autolyzed and largely sloughed
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2226 |
Urinary bladder
|
PAXgene |
1
|
6 pieces of adipose tissue only; no urothelium or detrussor muscle is present
|
Unacceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2326 |
Brain - cortex
|
PAXgene |
1
|
4 ~ 5x3mm pieces, fragments of adherent dura/pia mater are present
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2426 |
Brain - cerebellum
|
PAXgene |
2
|
4 ~ 6x3mm pieces. Granular layer more autolyzed
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2526 |
Prostate
|
PAXgene |
1
|
2 ~8x8mm pieces, all stroma, no glandular component present. ?stromal nodule vs exuberant
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2626 |
Pituitary gland
|
PAXgene |
2
|
1 ~ 5x4mm aliquot
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0126 |
Artery - tibial
|
PAXgene |
1
|
2 ~1.3x 0.8mm aliquots; good clean small muscular artery specimens
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0226 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 ~9x6mm aliquots, few atrophic ductal structures; one aliquot with extensive ‘contaminating’ skeletal muscle (?pectoralis)
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0326 |
Aorta
|
PAXgene |
1
|
6 ~9x1.5mm pieces, patchy atherosis
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0426 |
Coronary artery
|
PAXgene |
1
|
2 ~5.5xmm aliquots, 20% circumferential calcified atherosclerotic luminal occlusion, ? hemorrhagic dissection
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0526 |
Heart
|
PAXgene |
1
|
2 ~9x7mm aliquots. Extensive interstititial fibrosis/infarcts.
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0626 |
Colon, transverse
|
PAXgene |
3
|
6 ~9x2mm pieces. Mucosa sloughed in >50%; where present, badly autolyzed, score three, ~10% of thickness. Areas of poor/under-fixation
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0726 |
Kidney - medulla
|
PAXgene |
3
|
2 ~10x8mm aliquots. Contaminant glomeruli in one aliquot, ~40%. Chronic/fibrosing intersitital nephritis; focal areas of ‘thyroidization’.
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0826 |
Kidney - cortex
|
PAXgene |
3
|
6 ~6x5mm pieces. Chronic interstitial nepthritis. Both glomeruli and tubules show severe autolysis
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0926 |
Brain - cortex
|
PAXgene |
1
|
4 pieces, ~ 7x4mm
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1026 |
Brain - cerebellum
|
PAXgene |
2
|
4 ~6x5mm pieces, granular layer more autolyzed
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1126 |
Fallopian tube
|
PAXgene |
1
|
2 pieces fibrovascular tissue, no tube is present
|
Unacceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1226 |
Pituitary gland
|
PAXgene |
2
|
A ~ 7x6.6 mm aliquot, with a 6.5x4.2 mm adenohypophysis and a ~3.2x2.5mm neurohypophysis/stalk fragment
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1326 |
Thyroid gland
|
PAXgene |
1
|
2 pieces of fibroadipose tissue, unknown provenance.
|
Unacceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1426 |
Vagina
|
PAXgene |
2
|
6 ~9x3mm pieces. Squamous mucosa has sloughed from ~50% of tissue; where present, is ~1% of thickness
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-1526 |
Skin, leg
|
PAXgene |
1
|
6 ~8x1.5mm pieces. Squamous mucosa is 1.5-2% of thickness
|
Acceptable
|
|