GTEX-1EX96
|
51-60
|
Male
|
GTEX-1EX96-3026 |
Brain - cortex
|
PAXgene |
1
|
2 pieces, no abnormalities
|
Acceptable
|
 |
GTEX-1EX96
|
51-60
|
Male
|
GTEX-1EX96-3126 |
Brain - cerebellum
|
PAXgene |
1
|
2 pieces, no abnormalities
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-0126 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; 1 piece contains 60% fibrovascular stroma
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-0226 |
Atrial appendage
|
PAXgene |
0
|
2 pieces; minimal fibrofatty tissue
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-0326 |
Heart
|
PAXgene |
1
|
2 pieces; focal mild interstitial fibrosis enlarged nuclei; 1 piece has 10% internal & external fat content
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-0426 |
Coronary artery
|
PAXgene |
1
|
2 pieces; heavily calcified atheromatous plaques; 50% external fat; minimal medial layer; limited value
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-0526 |
Lung
|
PAXgene |
1
|
2 pieces; emphysema, fibrosis, vascular sclerosis, focal anthracotic pigment, pigmented alveolar macrophages; large vessels and bronchus comprise 20% of 1 piece
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-0626 |
Aorta
|
PAXgene |
1
|
6 pieces; moderate atheromatous plaque; focal calcification in 2 pieces
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-0726 |
Spleen
|
PAXgene |
1
|
2 pieces; mild congestion
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-0826 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; all cortex; 1 piece has 50% external fat
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-0926 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; severe arterial, arteriolar, & glomerular sclerosis with extensive tubular hyalin casts; no normal tissue remains
|
Unacceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1026 |
Pancreas
|
PAXgene |
1
|
2 pieces; 1 piece has 30% external fat; other has 30% large blood vessels & fat
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1126 |
Prostate
|
PAXgene |
1
|
2 pieces; more stroma than glands: 70:30
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1226 |
Testis
|
PAXgene |
1
|
2 pieces; greatly reduced mature spermatogenesis
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1326 |
Omentum
|
PAXgene |
1
|
2 pieces; 10% vascular content
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1426 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; all have 10% interstitial fibrous content
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1526 |
Esophagus - mucosa
|
PAXgene |
0
|
2 pieces; muscularis propria makes up 20 to 30% in 4 of 6 pieces [labeled]; large submucosal gland comprises 10% of 1 piece, 5% of another piece [labeled]
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; 2 pieces are pure muscularis, 4 have 100%, 80%, 70% & 20% submucosal stroma; 1 has 1 mm squamous carry-over
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; 3 pieces have mucosa as well as muscularis; foci of edematous, amyloid-like stroma or fibroelastosis in submucosa of 3 pieces [circled] (as in transverse colon)
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1826 |
Stomach
|
PAXgene |
1
|
6 pieces; full thickness specimens; microcystic glandular change [outlined]
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-1926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; foci of edematous, amyloid-like stroma or fibroelastosis in submucosa of 2 pieces, measuring up to 3x1mm, [labeled] like in sigmoid colon; no sign of amyloid in other tissues
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-2026 |
Ileum
|
PAXgene |
1
|
6 pieces; all have muscularis and fat, no mucosa or lymphoid tissue
|
Unacceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-2126 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces; dense fibrous stroma and ductal proliferation consistent with gynecomastia, especially in 1 piece
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-2226 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; well trimmed; contains several hair follicles
|
Acceptable
|
 |
GTEX-1F5PK
|
51-60
|
Male
|
GTEX-1F5PK-2326 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces; moderately to severely atrophic, fibrotic glands with ductal dilatation
|
Acceptable
|
 |