GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-0826 |
Lung
|
PAXgene |
1
|
2 pieces, 10x7 & 12.5x8.5mm; emphysematous changes, carbon particle deposition, rep foci delineated
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-0926 |
Liver
|
PAXgene |
1
|
2 pieces, 10x10 & 11x10mm; mild-moderate macrovesicular steatosis involving ~30-40% of parenchyma
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1026 |
Pancreas
|
PAXgene |
1
|
2 pieces, 14x12 & 14x11mm; incidental neuroendocrine tumor ~2.5mm d (Islet cell tumor), encircled. Well visualized islets, rep. ones delineated.
|
Unacceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1126 |
Spleen
|
PAXgene |
1
|
2 pieces, 11x10 & 13x11mm;
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1226 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces, up to 7x3mm; glomeruli seen; patchy chronic interstitial nephritis; lymphoid aggregates delineated (rep).
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1326 |
Adrenal glands
|
PAXgene |
2
|
2 pieces, 12x8 & 12x8mm; all cortex, moderate-severe autolysis
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1426 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 12x4mm; all muscle; good specimens
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1526 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 9x3mm; all muscle, good specimens. Sub-mucosal mucinous glands noted in several sections, rep. ones delineated
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 10x2mm; squamous mucosa is ~10-15% of thickness
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1726 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 10x2mm; mucosa is 90--100% of thickness, remarkably pure but moderately autolyzed
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1826 |
Ileum
|
PAXgene |
2
|
6 pieces, up to 11x2mm; actually ileum, lymphoid elements are ~15% of specimen
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-1926 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 7x3mm all colonic mucosa; 80-90% thickness is mucosa, moderately - severely autolyzed
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 10x3mm; ~50% badly autolyzed mucosa, rest is muscle & fat
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2126 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 16x13 & 17x12mm; mainly fibroadipose tissue, a few atrophic ductal elements noted, rep ones delineated
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2226 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces, 16x10 & 18x9mm; largely squamous mucosa (inner lip) and stroma, minute glands are <5% tissue volume
|
Unacceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2326 |
Skin, leg
|
PAXgene |
0
|
6 pieces, up to 12x2.5mm; squamous epithelium is ~1-2% thickness
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2426 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 12x11 & 15x7.5mm; ~19% fibrous tissue, delineated
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2526 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 9x9 & 9x7mm; <1% interstitial fat
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2626 |
Nerve - tibial
|
PAXgene |
0
|
4 pieces, up to 6x5mm; good clean specimens
|
Acceptable
|
 |
GTEX-Y5V5
|
61-70
|
Female
|
GTEX-Y5V5-2726 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, 3x2.5 & 4x3mm; one aliquot has ~0.5mm nubbin of adherent fat/fibrous tissue
|
Acceptable
|
 |
GTEX-Y8LW
|
51-60
|
Female
|
GTEX-Y8LW-0126 |
Spleen
|
PAXgene |
2
|
2 pieces, 11x11 & 11x11mm; mild congrestion
|
Acceptable
|
 |
GTEX-Y8LW
|
51-60
|
Female
|
GTEX-Y8LW-0226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 10x9 & 10x8mm; fewe scarred areas
|
Acceptable
|
 |
GTEX-Y8LW
|
51-60
|
Female
|
GTEX-Y8LW-0326 |
Lung
|
PAXgene |
1
|
2 pieces, 9x6 & 7x6.5mm; patchy chronic and active pneumonitis
|
Acceptable
|
 |
GTEX-Y8LW
|
51-60
|
Female
|
GTEX-Y8LW-0426 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 9x3mm; adherent adventia up to ~1mm along edges of most sections
|
Acceptable
|
 |
GTEX-Y8LW
|
51-60
|
Female
|
GTEX-Y8LW-0526 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 11x6mm; all muscularis, nubbins of attached serosal fibrous tissue up to ~3mm, rep ones delineated
|
Acceptable
|
 |