GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-1626 |
Stomach
|
PAXgene |
1
|
6 pieces, mucosa up to ~1mm, ~40-50% thickness
|
Acceptable
|
|
GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-1726 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces mainly gastric mucosa, not target esophageal/GEJ muscularis
|
Unacceptable
|
|
GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-1826 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, mucosa up to ~0.3mm, ~40% thickness
|
Acceptable
|
|
GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-1926 |
Ileum
|
PAXgene |
1
|
6 pieces, ~15% target lymphoid aggregates, rep delineated
|
Acceptable
|
|
GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-2026 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, ~30% 'contaminant mucosa (rep delineated); rest is target muscularis
|
Acceptable
|
|
GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-2126 |
Prostate
|
PAXgene |
1
|
2 pieces, mainly stroma, no abnormalitites
|
Acceptable
|
|
GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-2226 |
Testis
|
PAXgene |
1
|
2 pieces, spermatogenesis present but appears reduced. Trace atypical mononculear cells
|
Acceptable
|
|
GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-2326 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, minor salivary gland tissue
|
Acceptable
|
|
GTEX-1HBPN
|
51-60
|
Male
|
GTEX-1HBPN-2426 |
Liver
|
PAXgene |
1
|
2 pieces, polymorphonuclear cells in sinuosoids and mild portal and lobular chronic inflammation. Reviewed by NIH consult panel.
|
Unacceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-0126 |
Spleen
|
PAXgene |
1
|
2 pieces; mild congestion
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-0226 |
Adrenal glands
|
PAXgene |
1
|
2 pieces; up to 3.8 mm external untrimmed fat
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-0326 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; over half the pieces are largely medulla; considerable glomerular and vascular sclerosis
|
Unacceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-0426 |
Lung
|
PAXgene |
1
|
2 pieces; extensive interstitial fibrosis; several foci of bronchopneumonia; <30% is relatively undamaged lung
|
Unacceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-0526 |
Coronary artery
|
PAXgene |
1
|
2 pieces; mild to moderate plaque formation; well trimmed
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-0626 |
Atrial appendage
|
PAXgene |
1
|
2 pieces; 1 piece has 50% fat content, internal and external
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-0726 |
Heart
|
PAXgene |
1
|
2 pieces; small foci of interstitial fibrosis
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-0826 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; ductal and lobular units present in a fibrofatty stroma
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-0926 |
Omentum
|
PAXgene |
1
|
2 pieces; <5% fibrous content
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-1026 |
Pancreas
|
PAXgene |
1
|
2 pieces; well preserved; moderate fibrosis and loss of exocrine tissue
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-1126 |
Aorta
|
PAXgene |
1
|
6 pieces; mild plaque formation
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-1226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; smaller piece has 30% fibrous content
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-1326 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; 10% dermal fat
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-1426 |
Ovary
|
PAXgene |
1
|
2 pieces; lymph node sampled not ovary
|
Unacceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; well dissected squamous mucosa
|
Acceptable
|
|
GTEX-1HC8U
|
41-50
|
Female
|
GTEX-1HC8U-1626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, 1 is all fibrovascular tissue; others have up to 10% fibrous content
|
Acceptable
|
|