GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
5 pieces, up to 8x3mm; all have mucosa
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-1626 |
Uterus
|
PAXgene |
1
|
2 pieces, 8x8 & 8x7mm; 1 has 3 areas of endometrium cut obliquely; other is only myometrium in this section
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-1726 |
Ovary
|
PAXgene |
0
|
2 pieces, 8x6.5 & 10x10mm; corpora albicans; atrophic
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-1826 |
Omentum
|
PAXgene |
0
|
2 pieces, 13x10 & 16x10.5mm;
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-1926 |
Stomach
|
PAXgene |
1
|
6 pieces, up to 9x5mm; 5 of 6 are all muscle; only minute pieces of mucosa present
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2026 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 15x6mm; all 6 have full thickness of colon (target is muscle only)
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2126 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 9x5mm; up to 2mm of subcutaneous adipose with several large vessels
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2226 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, up to 10x5.5mm; 5 have mucosa
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2326 |
Ileum
|
PAXgene |
2
|
3 pieces, up to 11x7.5mm; duodenum, not ileum (contains Brunner glands) no lymphoid tissue; full thickness wall rather than mucosa
|
Unacceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2426 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 12x6 & 10x9mm; 5% internal adipose
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2526 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 5x4 & 6x4mm; 25% adherent adipose
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2626 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 4x3 & 6x4mm; 1 has artery + 2 veins and 30% adherent stroma; other artery is fragmented; both contain medial calcification
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2726 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 12x11 & 11x8mm; 1 has ~15% nerve and blood vessels
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2826 |
Vagina
|
PAXgene |
1
|
6 pieces, up to 9.5x5.5mm; 3 have vagina, 3 have only fibrofatty tissue. The epithelium makes up only 2% of the specimen's thickness in most vaginal specimens (as in this one). The rest is fibromuscular stroma.
|
Acceptable
|
|
GTEX-XYKS
|
61-70
|
Female
|
GTEX-XYKS-2926 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces, 3x2 & 2x2mm; 1 w/ 3, 0.5mm salivary glands; other no glands, only muscle and nerves
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0126 |
Atrial appendage
|
PAXgene |
1
|
2 pieces 7.5x8 & 6.5x6; no significant fibrosis
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0226 |
Heart
|
PAXgene |
1
|
2 pieces 9x7 & 13x9mm; minimal ischemic changes
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0326 |
Coronary artery
|
PAXgene |
1
|
2 pieces, 6x4.5 & 7x5mm; nubbins of adherent fat on both, up to ~2.5mm, delineated. 40-50% occlusive atherosclerosis, focally calcified
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0426 |
Aorta
|
PAXgene |
1
|
6pieces, up to 7x2mm;
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0526 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, 17x12 & 18x14mm; 99% cortex, 1% medulla (delineated). Remarkably well preserved, adherent fat ~30% of both aliquots up to 3mm thick
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0626 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 11x7 & 7x5.5mm; 1mm colloid cyst in one aliquot, delineated. 2x1mm focus of fibrous tissue in other aliquot, delineated
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0726 |
Spleen
|
PAXgene |
1
|
2 pieces, 10x7 & 14x7mm; milde congestion
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0826 |
Pancreas
|
PAXgene |
1
|
2 pieces, 13x11 & 13.5x11mm; interstitial fibrosis s/o remote pancreatitis, Islets well- visualized, encircled (rep)
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-0926 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x4mm; squamous mucosa 10-15% thickness, submucosal glands abundant, rep. ones encircled
|
Acceptable
|
|
GTEX-Y114
|
41-50
|
Female
|
GTEX-Y114-1026 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 8x5mm; all muscularis, good specimens
|
Acceptable
|
|