Not tube; probably broad ligament
*Original specimen not tube
(See Issue below); no need for LDACC to process current specimen.
Unacceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-2126
Ovary
PAXgene
1
Well-preserved; post menopausal/inactive
Acceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-2226
Cervix - ectocervix
PAXgene
1
No squamous mucosa present; Recut: rotation of block shows no mucosa
Acceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-2326
Cervix - endocervix
PAXgene
1
No endocervical mucosa present or totally autolyzed; Recut: rotation of block shows no mucosa, however focal lower uterine segment stroma is now present.
Acceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-2426
Uterus
PAXgene
2
Basalis endometrium <5% of specimen. Endometrium moderately autolyzed
Acceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-2526
Vagina
PAXgene
1
Squamous mucosa ~2-3% of thickness
Acceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-2626
Stomach
PAXgene
3
Mucosa ~80% autolyzed
Acceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-2726
Colon, transverse
PAXgene
3
Mucosa completely autolytic; only viable tissue is muscularis propria and adipose
Acceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-2826
Pituitary gland
PAXgene
1
Moderately autolyzed
Acceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-2926
Brain - cortex
PAXgene
1
adequate for analysis
Acceptable
GTEX-NL3G
61-70
Female
GTEX-NL3G-3026
Brain - cerebellum
PAXgene
1
Granular layer appears slightly autolyzed; outer layer many cracks (artifacts); last tissue fixed.