GTEX-1QP2A
|
51-60
|
Male
|
GTEX-1QP2A-0226 |
Adipose tissue
|
PAXgene |
1
|
2 partly fragmented pieces; 20% fibrous content in 1
|
Acceptable
|
 |
GTEX-1QP2A
|
51-60
|
Male
|
GTEX-1QP2A-0726 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; 1 with and 1 without mammary ducts in fibrofatty tissue
|
Acceptable
|
 |
GTEX-1QP2A
|
51-60
|
Male
|
GTEX-1QP2A-1026 |
Atrial appendage
|
PAXgene |
1
|
2 fragmented pieces; 30% fibrous content in largest piece
|
Acceptable
|
 |
GTEX-1QP2A
|
51-60
|
Male
|
GTEX-1QP2A-1126 |
Heart
|
PAXgene |
1
|
2 pieces; several small foci of fibrosis in 1 piece
|
Acceptable
|
 |
GTEX-1QP2A
|
51-60
|
Male
|
GTEX-1QP2A-1426 |
Omentum
|
PAXgene |
0
|
2 pieces; 5% fibrous content in 1; 1% in other
|
Acceptable
|
 |
GTEX-1QP2A
|
51-60
|
Male
|
GTEX-1QP2A-2226 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; variable amounts of perimuscular fat in 3 pieces, up to 40% area
|
Acceptable
|
 |
GTEX-1QP67
|
41-50
|
Female
|
GTEX-1QP67-0226 |
Pancreas
|
PAXgene |
1
|
2 pieces, islets well-preserved, though rare, rep encircled. Focal Pan IN 1, ensquared (PRC consensus)
|
Acceptable
|
 |
GTEX-1QP9N
|
21-40
|
Male
|
GTEX-1QP9N-1226 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces; several hair follicles in each piece; well trimmed; <10% dermal fat
|
Acceptable
|
 |
GTEX-1QP9N
|
21-40
|
Male
|
GTEX-1QP9N-1526 |
Adipose tissue
|
PAXgene |
0
|
2 pieces; sweat glands and ducts embedded in fibrous stroma comprise 10%
|
Acceptable
|
 |
GTEX-1QPFJ
|
21-40
|
Female
|
GTEX-1QPFJ-1626 |
Vagina
|
PAXgene |
0
|
6 pieces; all full thickness with no lesions in epithelium
|
Acceptable
|
 |
GTEX-1QPFJ
|
21-40
|
Female
|
GTEX-1QPFJ-1826 |
Uterus
|
PAXgene |
0
|
2 pieces; no endometrium (in these cuts); 1 piece is 40% endocervix (arrowed)
|
Acceptable
|
 |
GTEX-1QPFJ
|
21-40
|
Female
|
GTEX-1QPFJ-2026 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; several atrophic ducts in fibrofatty tissue
|
Acceptable
|
 |
GTEX-1QW4Y
|
21-40
|
Male
|
GTEX-1QW4Y-0526 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces target squamous mucosa is partly sloughing, ~0.2mm, ~5-10% thickness. Chronic lymphoid aggregates in lamina propria. Switch with -0425
|
Acceptable
|
 |
GTEX-1R7EU
|
61-70
|
Male
|
GTEX-1R7EU-1126 |
Stomach
|
PAXgene |
1
|
7 pieces; mild to moderate autolysis of mucosa and moderate autolysis of submucosa; preserved muscularis; scattered lymphoid aggregates in submucosa (arrows)
|
Acceptable
|
 |
GTEX-1R9PN
|
41-50
|
Female
|
GTEX-1R9PN-0226 |
Aorta
|
PAXgene |
1
|
6 pieces; minimal plaque; 4 pieces have hemorrhage in adventitia up to 2mm thick
|
Acceptable
|
 |
GTEX-1R9PN
|
41-50
|
Female
|
GTEX-1R9PN-1026 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; well dissected muscularis except for a 0.4mm focus of epithelium in 1 [circled]
|
Acceptable
|
 |
GTEX-1RAZR
|
41-50
|
Male
|
GTEX-1RAZR-1226 |
Esophagus - mucosa
|
PAXgene |
0
|
6 pieces; moderately hyperplastic squamous epithelium with chronic inflammation in lamina propria and squamous metaplasia of glandular ducts [circled]; a few submucosal glands [arrowed]
|
Acceptable
|
 |
GTEX-1RAZR
|
41-50
|
Male
|
GTEX-1RAZR-1826 |
Ileum
|
PAXgene |
1
|
5 pieces; abundant lymphoid nodules in 4 pieces [circled]; well dissected
|
Acceptable
|
 |
GTEX-1RDX4
|
51-60
|
Female
|
GTEX-1RDX4-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces; high fibrous content: 80% in 1 piece 40% in other; focus of sweat glands in 1 [arrowed]
|
Acceptable
|
 |
GTEX-1RDX4
|
51-60
|
Female
|
GTEX-1RDX4-0526 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; moderate intimal sclerosis with large, 1cm, calcific deposit in 1 piece
|
Acceptable
|
 |
GTEX-1RDX4
|
51-60
|
Female
|
GTEX-1RDX4-1126 |
Coronary artery
|
PAXgene |
1
|
2 pieces; slight intimal sclerosis with large, 1.5cm, calcific deposit in 1 piece; large amount of perivascular fat up to 2.4cm thick
|
Acceptable
|
 |
GTEX-1RDX4
|
51-60
|
Female
|
GTEX-1RDX4-1226 |
Atrial appendage
|
PAXgene |
1
|
2 pieces; 50% fibrous content in 1 piece; 20% fat content in other piece
|
Acceptable
|
 |
GTEX-1RDX4
|
51-60
|
Female
|
GTEX-1RDX4-3026 |
Brain - cortex
|
PAXgene |
1
|
4 pieces; well dissected; small amount of leptomeninges in sulci
|
Acceptable
|
 |
GTEX-1S5ZU
|
21-40
|
Female
|
GTEX-1S5ZU-1026 |
Lung
|
PAXgene |
1
|
2 pieces; no exudates or fibrosis; bronchus in larger piece
|
Acceptable
|
 |
GTEX-1S5ZU
|
21-40
|
Female
|
GTEX-1S5ZU-2426 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; extraneous fibrous and fatty tissue in several pieces
|
Acceptable
|
 |