GTEX-12ZZX
|
41-50
|
Female
|
GTEX-12ZZX-2526 |
Ileum
|
PAXgene |
3
|
4 pieces, mucosa badly autolyzed, lymphoid aggregates remain, ~10% tota tisssue
|
Acceptable
|
 |
GTEX-12ZZY
|
61-70
|
Male
|
GTEX-12ZZY-2626 |
Ileum
|
PAXgene |
3
|
4 pieces; mucosal epithelium totally autolyzed; lymphoid aggregares persist, up to ~30% of 2 sections
|
Acceptable
|
 |
GTEX-12ZZZ
|
61-70
|
Male
|
GTEX-12ZZZ-2126 |
Ileum
|
PAXgene |
2
|
6 pieces; only one meager lymphoid nodule (annotated) in autolyzed mucosa; might be a target for LCM, too little for GTEx
|
Unacceptable
|
 |
GTEX-13111
|
51-60
|
Male
|
GTEX-13111-1426 |
Ileum
|
PAXgene |
1
|
6 pieces; each piece contains one to two well preserved lymphoid nodules (outlined); surface mucosa autolyzed and only focally preserved; muscle (not target) present on all
|
Acceptable
|
 |
GTEX-13112
|
51-60
|
Male
|
GTEX-13112-1726 |
Ileum
|
PAXgene |
2
|
8 pieces; 5 lymphoid nodules annotated; remainder of tissue is autolyzed; will need LCM or TMA to select lymphoid areas
|
Acceptable
|
 |
GTEX-13113
|
61-70
|
Female
|
GTEX-13113-1226 |
Ileum
|
PAXgene |
1
|
6 pieces, exceptionally well-preserved; lymphoid aggregates ~10-15% of total tissue, delineated
|
Acceptable
|
 |
GTEX-1313W
|
51-60
|
Female
|
GTEX-1313W-2226 |
Ileum
|
PAXgene |
3
|
4 pieces, fragmented muscularis and severely autolyzed mucosa, no residual lymphoid tissue
|
Unacceptable
|
 |
GTEX-131XE
|
41-50
|
Male
|
GTEX-131XE-0926 |
Ileum
|
PAXgene |
1
|
6 pieces; several lymphoid nodules (delineated) in 3 pieces; all have muscularis propria (not target)
|
Acceptable
|
 |
GTEX-131XF
|
51-60
|
Male
|
GTEX-131XF-1326 |
Ileum
|
PAXgene |
1
|
4 pieces; several lymphoid nodules (delineated) in well preserved mucosa
|
Acceptable
|
 |
GTEX-131XG
|
51-60
|
Female
|
GTEX-131XG-1726 |
Ileum
|
PAXgene |
2
|
6 pieces, mucosa variably preserved, rare lymphoid aggregates, rep encircled
|
Acceptable
|
 |
GTEX-131XH
|
51-60
|
Male
|
GTEX-131XH-1726 |
Ileum
|
PAXgene |
3
|
4 pieces, mucoasa autolyzed, rep lympohid aggregated delineated, ~15-20% total
|
Acceptable
|
 |
GTEX-131XW
|
51-60
|
Female
|
GTEX-131XW-2626 |
Ileum
|
PAXgene |
2
|
6 pieces, good lymphoid component, but includes abundant muscularis
|
Unacceptable
|
 |
GTEX-131YS
|
61-70
|
Female
|
GTEX-131YS-2526 |
Ileum
|
PAXgene |
3
|
4 pieces; no evidence of viable mucosa and no lymphoid nodules
|
Unacceptable
|
 |
GTEX-132AR
|
51-60
|
Female
|
GTEX-132AR-2626 |
Ileum
|
PAXgene |
2
|
4 pieces; well dissected mucosa, but limited amount of lymphoid tissue (delineated); LCM may be possible
|
Unacceptable
|
 |
GTEX-132NY
|
51-60
|
Male
|
GTEX-132NY-2426 |
Ileum
|
PAXgene |
3
|
4 pieces, mucosa autolyzed, lymphoid aggregates ~10-15% total
|
Acceptable
|
 |
GTEX-132Q8
|
61-70
|
Male
|
GTEX-132Q8-2626 |
Ileum
|
PAXgene |
3
|
7 pieces; fragments of autolyzed mucosa, muscularis, and only rare lymphoid follicle (target)
|
Unacceptable
|
 |
GTEX-132QS
|
61-70
|
Male
|
GTEX-132QS-2026 |
Ileum
|
PAXgene |
1
|
6 pieces, well - preserved mucosa, only trace lymphoid aggregates, delineated
|
Acceptable
|
 |
GTEX-1339X
|
41-50
|
Male
|
GTEX-1339X-1526 |
Ileum
|
PAXgene |
1
|
6 pieces; only 1 piece contains lymphoid tissue; better suited for LCM
|
Unacceptable
|
 |
GTEX-133LE
|
21-40
|
Female
|
GTEX-133LE-1426 |
Ileum
|
PAXgene |
1
|
5 pieces; several lymphoid nodules in 3 pieces; well dissected
|
Acceptable
|
 |
GTEX-1399Q
|
41-50
|
Male
|
GTEX-1399Q-2226 |
Ileum
|
PAXgene |
2
|
4 pieces; fragments of autolyzed mucosa, muscularis, and fat; no lymphoid tissue
|
Unacceptable
|
 |
GTEX-1399R
|
21-40
|
Male
|
GTEX-1399R-2026 |
Ileum
|
PAXgene |
1
|
6 pieces; all pieces contain lymphoid nodulles
|
Acceptable
|
 |
GTEX-1399S
|
21-40
|
Female
|
GTEX-1399S-2026 |
Ileum
|
PAXgene |
1
|
6 pieces, ~well preserved, lymphoid/Peyer aggregates are up to ~40% total tissue
|
Acceptable
|
 |
GTEX-1399T
|
61-70
|
Male
|
GTEX-1399T-1726 |
Ileum
|
PAXgene |
3
|
5 pieces; autolyzed and congested mucosa with one lymphoid nodule (outlined)
|
Unacceptable
|
 |
GTEX-1399U
|
41-50
|
Female
|
GTEX-1399U-2126 |
Ileum
|
PAXgene |
2
|
4 pieces, lymphoid aggregates ~10-15% total
|
Acceptable
|
 |
GTEX-139D8
|
21-40
|
Female
|
GTEX-139D8-2726 |
Ileum
|
PAXgene |
3
|
4 pieces; limited amount of lymphoid tissue [annotated]; better suited for LCM
|
Unacceptable
|
 |