GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0426 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 8x2.5mm; 1 piece without epidermis (in this cut). most subcutaneous adipose trimmed
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0526 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, 9x8 & 9x8mm; no unfixed center; 1 piece has 20% loose fibrous stroma centrally
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0626 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 10x8 & 11x7.5mm; well trimmed, but 10-20% internal adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0726 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, 6x3 & 5x3mm; up to 0.6 mm external adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0826 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, 3x2.5 & 3x2mm; well trimmed, no lesions
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-0926 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 7x3mm; 1 of 6 without epidermis [in this section; could be on another surface]
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1026 |
Testis
|
PAXgene |
1
|
2 pieces, 8.5x6 & 8x7mm; spermatogenesis
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1126 |
Lung
|
PAXgene |
1
|
2 pieces, 8x8 & 8x7mm; well preserved, noninflamed lung; 1 piece has pleura with subpleural pigmented macrophages.
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1226 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 8x7 & 11x9mm; lymphocytic (Hashimoto) thyroiditis with moderate fibrosis; up to 0.7 mm adipose focally on one; other is fat free
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1326 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 8x3mm; well trimmed, slight plaques
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1426 |
Omentum
|
PAXgene |
0
|
2 pieces, 11x7 & 11x7mm; slight hollow center
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1526 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 7x3mm; well dissected, superficial surface sloughed
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 8x4mm; well dissected, no mucosa, no adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1726 |
Spleen
|
PAXgene |
1
|
2 pieces, 9.5x9 & 9x8mm; lymphoid tissue better preserved than in ileum
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1826 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 10x6mm; well trimmed, no mucosa, no adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-1926 |
Pancreas
|
PAXgene |
1
|
2 pieces, 8x8 & 8x8mm; autolysis varies 1 to 2; well trimmed; 10% internal adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2026 |
Stomach
|
PAXgene |
1
|
6 pieces, up to 8.5x4mm; good thick mucosa
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2126 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 8x2mm; mucosa superficially sloughed otherwise well preserved; lymphoid nodules annotated
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2226 |
Ileum
|
PAXgene |
2
|
6 pieces, up to 6x3mm; lymphoid=2; mucosa=3; well dissected; lymphoid nodules annotated
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2326 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 7x3mm; well dissected, no mucosa, some adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2426 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 8x8 & 9x8mm; 1 piece is all adipose with 40% empty central hole. other piece has several ducts in fibrous stroma, remainder adipose
|
Acceptable
|
|
GTEX-XQ8I
|
51-60
|
Male
|
GTEX-XQ8I-2526 |
Prostate
|
PAXgene |
2
|
2 pieces, 8x7 & 9x7mm; Glands=3; stroma=1. 1 piece is all fibromuscular tissue, no glands; other piece has glands as well as stroma
|
Acceptable
|
|
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-0126 |
Ovary
|
PAXgene |
0
|
2 pieces, 8.5x7 & 8.5x8mm; tiny (early) serous cystadenofibroma on surface of 1 piece
|
Acceptable
|
|
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-0226 |
Uterus
|
PAXgene |
0
|
2 pieces, 9x6 & 9x9mm; no endometrium, only myometrium (in these sections)
|
Acceptable
|
|
GTEX-XUW1
|
51-60
|
Female
|
GTEX-XUW1-0326 |
Vagina
|
PAXgene |
0
|
6 pieces, up to 8x4mm;
|
Acceptable
|
|