GTEX-XBEC
|
51-60
|
Male
|
GTEX-XBEC-2226 |
Pancreas
|
PAXgene |
3
|
2 pieces, 9.5x7 & 9x8mm; minimal adherent fat, delineated, poorly preserved
|
Acceptable
|
|
GTEX-XBEC
|
51-60
|
Male
|
GTEX-XBEC-2326 |
Kidney - cortex
|
PAXgene |
3
|
6 pieces, up to 8x3mm;
|
Acceptable
|
|
GTEX-XBEC
|
51-60
|
Male
|
GTEX-XBEC-2426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 9x2mm; mucosa sloughed
|
Acceptable
|
|
GTEX-XBEC
|
51-60
|
Male
|
GTEX-XBEC-2526 |
Ileum
|
PAXgene |
3
|
4 pieces, up to 5x2mm; ~10-20% lymphoid elements, delineated (rep), poorly preserved
|
Acceptable
|
|
GTEX-XBEC
|
51-60
|
Male
|
GTEX-XBEC-2626 |
Stomach
|
PAXgene |
2
|
6 pieces, up to 9x2mm; mucosa 40-100% thickness, moderately--poorly preserved
|
Acceptable
|
|
GTEX-XBEC
|
51-60
|
Male
|
GTEX-XBEC-2726 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces, up to 7x3mm; ~60-70% muscle, delineated 9rep), rest is fat
|
Acceptable
|
|
GTEX-XBEC
|
51-60
|
Male
|
GTEX-XBEC-2826 |
Prostate
|
PAXgene |
3
|
2 pieces 10x8 & 8x5.9mm; glandular mucosa badly autolyzed
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-0126 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, 9.5x9 & 9x8mm; 10% peripheral adipose
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-0226 |
Pancreas
|
PAXgene |
1
|
2 pieces, 12.5x10 & 14x13mm; Scattered eosinophilic foci in exocrine and endocrine tissue, some having infarcted centers and fibrin thrombi in capillaries.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-0326 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, 19x18 & 14x10mm; 40% external adipose. Several capillaries contain fibrin thrombi.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-0426 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 15x11 & 14x11mm; Good specimen.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-0526 |
Heart
|
PAXgene |
1
|
2 pieces, 11x10 & 10x9mm; Enlarged nuclei c/w hypertension. !x7mm adipose on edge of 1 piece.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-0626 |
Coronary artery
|
PAXgene |
1
|
3 pieces, up to 8x5mm; Excessive extraneous adipose, up to 60% of tissue.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-0726 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 11x5mm; Prominent sclerotic plaques in 3/6.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-0826 |
Lung
|
PAXgene |
1
|
2 pieces, 10x6 & 12x9mm; Moderate numbers of heart failure cells
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-0926 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, up to 11x5mm; Well trimmed muscularis.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, up to 12x3mm; Chronic inflammation and squamous hyperplasia. Abundant submucosal glands in the 2 largest pieces
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1126 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, up to 12x5mm; Up to 1x3mm adipose on 2 pieces
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1226 |
Stomach
|
PAXgene |
1
|
6 pieces, up to 12x4mm; Well preserved mucosa in all. Muscularis in 4/6.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1326 |
Omentum
|
PAXgene |
0
|
2 pieces, 12x8 & 11.5x11.5mm; No artifacts.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1426 |
Ileum
|
PAXgene |
1
|
6 pieces, up to 13x4mm; 5 of 6 pieces contain both mucosa and muscularis. Lymphoid tissue annotated on image.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 11x4mm; Mucosa varies from mild to moderate autolysis. All pieces are well sampled: mucosa and muscularis.
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1626 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 9x7 & 11x9mm; 1 piece is fibroadipose with mammary ducts, mild gynecomastia; other piece is all adipose
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1726 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 10x4mm; All pieces have mucosa and variable amounts of submucosal adipose. The sigmoid colon target is muscle only
|
Acceptable
|
|
GTEX-XBED
|
51-60
|
Male
|
GTEX-XBED-1826 |
Prostate
|
PAXgene |
3
|
2 pieces, 13x8.5 & 12.5x8mm; Glands severely autolyzed; stroma moderately. 2mm adipose on edge of 1 piece.
|
Acceptable
|
|