GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1726 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 6x3mm; all have full thickness with good mucosa
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1826 |
Stomach
|
PAXgene |
1
|
6 pieces, up to 9.5x4mm; 3 are full thickness, other 3 are muscularis only with adjacent submucosal adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-1926 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 9x5 & 7x7mm; ducts and immature lobules
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-2026 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 1.5x2.5mm & 2x1 mm; consists of nerves not artery, the smaller piece encased in ~60% adipose
|
Acceptable
|
|
GTEX-UPIC
|
21-40
|
Female
|
GTEX-UPIC-2126 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 2x1.5mm & 2x4mm; ~20% adjacent adipose
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-0126 |
Skin, leg
|
PAXgene |
2
|
6 pieces, up to 6x3.5mm; subcutaneous adipose up to 0.7mm on 2 pieces
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, 8x4 & 7x6.5mm; smaller piece has more fibrous stroma than larger
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-0326 |
Skin, suprapubic
|
PAXgene |
0
|
6 pieces, up to 6x2.5mm; up to 0.5mm subcutaneous adipose
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-0426 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 7x5 & 8x5mm;
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-0526 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 2x2 & 3x2mm; 3 arteries, no nerve; relabel
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-0626 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, 2x1 & 2.5x2mm; one artery, one vein; ~50% adipose encasing vessels
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-0726 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces, 7x6 & 9x6.5mm; small number of lobules and ~90% adipose
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-0826 |
Thyroid gland
|
PAXgene |
2
|
pieces, 8x5 & 7x6mm; ~20% adipose around one piece
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-0926 |
Coronary artery
|
PAXgene |
2
|
2 pieces, 4x2 & 4x3.5mm; ~3mm arteries with extensive atherosclerosis and old and recent intramural hemorrhages narrowing lumen to about 10%; adipose encases arteries up to ~0.8mm
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1026 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 8.5x5 & 8x4mm; appears edematous
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1126 |
Heart
|
PAXgene |
1
|
2 pieces, 8x8 & 8x6mm; hypereosinophilia consistent with early myocardial infarct
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1226 |
Aorta
|
PAXgene |
2
|
6 pieces, up to 9x1mm; focal calcification, no plaques; up to 1 mm adipose on adventitial side
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1326 |
Lung
|
PAXgene |
2
|
2 pieces, 7x7 & 8x6mm; markedly congested with focal hemorrhages; minimal air;
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1426 |
Spleen
|
PAXgene |
2
|
2 pieces, 8x7 & 9x5mm; moderately congested; capsule on one edge
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1526 |
Liver
|
PAXgene |
2
|
2 pieces, 8x8 & 9x7mm; moderately congested centrally associated with macrovesicular steatosis;
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1626 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces, up to 6x2mm; considerable surface sloughing
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1726 |
Esophagus - muscularis
|
PAXgene |
2
|
6 pieces, up to 8x3mm; muscle show loss of cohesion
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1826 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces, up to 8x3mm; muscle show loss of cohesion
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-1926 |
Adrenal glands
|
PAXgene |
3
|
2 pieces, 8x6 & 8x5mm; ~90% adipose; scarring; poorly preserved parenchyma scattered about; of limited value
|
Acceptable
|
|
GTEX-VJWN
|
51-60
|
Female
|
GTEX-VJWN-2026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces, up to 7x3mm; scattered arteriolar and glomerular sclerosis (hypertensive?)
|
Acceptable
|
|