GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2626 |
Colon, transverse
|
PAXgene |
2
|
3 (mucosa); 1-2 (muscularis); 6 ~ 6.5x1.5mm pieces. Epithelium totally autolyzed; mucosa partially sloughed
|
Acceptable
|
|
GTEX-PLZ5
|
41-50
|
Male
|
GTEX-PLZ5-1126 |
Colon, transverse
|
PAXgene |
1
|
6 ~5-6mm pieces. Areas of poor fixation. Mucosa is ~ 10% specimen thickness
|
Acceptable
|
|
GTEX-PLZ6
|
21-40
|
Male
|
GTEX-PLZ6-0926 |
Colon, transverse
|
PAXgene |
1
|
4 pieces, 7x2mm. Good mucosal preservation. Tissue separation with tears
|
Acceptable
|
|
GTEX-POMQ
|
21-40
|
Female
|
GTEX-POMQ-1826 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, ~6x3.5mm, poorly oriented with only minimal mucosa visible
|
Acceptable
|
|
GTEX-POYW
|
61-70
|
Male
|
GTEX-POYW-2126 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, ~7x2.5mm, mucosa totally autolyzed and largely sloughed
|
Acceptable
|
|
GTEX-PSDG
|
41-50
|
Male
|
GTEX-PSDG-1826 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, ~10x2.5mm, poorly preserved mucosa
|
Acceptable
|
|
GTEX-PVOW
|
21-40
|
Male
|
GTEX-PVOW-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces,~7x1.5mm; mucosa poorly preserved
|
Acceptable
|
|
GTEX-PW2O
|
21-40
|
Male
|
GTEX-PW2O-0926 |
Colon, transverse
|
PAXgene |
2
|
6 ~4.5x3.5mm pieces; mucosa variably preserved, 5-10% of thickness
|
Acceptable
|
|
GTEX-PWCY
|
21-40
|
Female
|
GTEX-PWCY-1026 |
Colon, transverse
|
PAXgene |
2
|
6 pieces, ~6x2 mm; mucosa varies in preservation from good to poor
|
Acceptable
|
|
GTEX-PWN1
|
41-50
|
Female
|
GTEX-PWN1-1426 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to ~8x3 mm; mucosa up to 0.4mm
|
Acceptable
|
|
GTEX-PWO3
|
61-70
|
Female
|
GTEX-PWO3-0626 |
Colon, transverse
|
PAXgene |
3
|
6 ~9x2mm pieces. Mucosa sloughed in >50%; where present, badly autolyzed, score three, ~10% of thickness. Areas of poor/under-fixation
|
Acceptable
|
|
GTEX-PWOO
|
41-50
|
Female
|
GTEX-PWOO-1326 |
Colon, transverse
|
PAXgene |
2
|
6 ~ 8x3.75mm pieces; mucosa is ~ 5-10% of thickness
|
Acceptable
|
|
GTEX-PX3G
|
21-40
|
Female
|
GTEX-PX3G-1426 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, ~6x4 mm; only 2 have abundant mucosa
|
Acceptable
|
|
GTEX-Q2AG
|
41-50
|
Female
|
GTEX-Q2AG-2026 |
Colon, transverse
|
PAXgene |
3
|
6 pieces ~ 8x1.5mm. Mucosa badly autolyzed, 10-25% of thickness
|
Acceptable
|
|
GTEX-Q2AH
|
21-40
|
Male
|
GTEX-Q2AH-1226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 9x3.6 mm; reactive lymphoid hyperplasia; good mucosa; edematous submucosa
|
Acceptable
|
|
GTEX-Q2AI
|
41-50
|
Male
|
GTEX-Q2AI-0926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 7.5x4 mm; good mucosa
|
Acceptable
|
|
GTEX-Q734
|
41-50
|
Female
|
GTEX-Q734-1126 |
Colon, transverse
|
PAXgene |
1
|
6 ~8.5x3m pieces. Mucosa is well-preserved, ~ 15% of thickness
|
Acceptable
|
|
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1626 |
Colon, transverse
|
PAXgene |
2
|
6 pieces up to ~11x4.7 mm
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2126 |
Colon, transverse
|
PAXgene |
3
|
6 ~9x1.5mm pieces. Epithelium totally autolyzed; mucosal stroma is ~10-12% of thickness
|
Acceptable
|
|
GTEX-QDVJ
|
51-60
|
Male
|
GTEX-QDVJ-1326 |
Colon, transverse
|
PAXgene |
1
|
6 pieces up to 7x3.5mm; 4 have mucosa at this level of sectioning
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1326 |
Colon, transverse
|
PAXgene |
2
|
6 ~9x3.5mm pieces; mucosa is ~10-12% thickness, only seen in 4 of 6 pieces
|
Acceptable
|
|
GTEX-QEG4
|
21-40
|
Male
|
GTEX-QEG4-1926 |
Colon, transverse
|
PAXgene |
3
|
6 ~6x2.5mm pieces. Mucosa is ~10-20% of thickness but epithelial component nearly totally autolyzed.
|
Acceptable
|
|
GTEX-QEG5
|
21-40
|
Male
|
GTEX-QEG5-2226 |
Colon, transverse
|
PAXgene |
3
|
6 pieces up to 12x3.5 mm; mucosa very autolyzed, muscle slightly autolyzed(1); lymphoid cells preserved; submucosa very edematous
|
Acceptable
|
|
GTEX-QEL4
|
51-60
|
Male
|
GTEX-QEL4-1926 |
Colon, transverse
|
PAXgene |
2
|
6 ~ 9x3/5mm pieces. Mucosa generally well-preserved, some autolysis superficially, is ~10% of thickness
|
Acceptable
|
|
GTEX-QESD
|
21-40
|
Male
|
GTEX-QESD-1126 |
Colon, transverse
|
PAXgene |
3
|
6 pieces up to 8.7x2.6 mm; mucosa almost completely autolyzed; muscle moderately autolyzed
|
Acceptable
|
|