GTEX-WK11
|
51-60
|
Male
|
GTEX-WK11-2226 |
Ileum
|
PAXgene |
2
|
4 pieces, up to 6x2mm; abundant lymphoid tissue in autolyzed mucosa, but all 4 pieces have muscularis propria
|
Acceptable
|
|
GTEX-WK11
|
51-60
|
Male
|
GTEX-WK11-2326 |
Colon, transverse
|
PAXgene |
3
|
6 pieces, up to 7x2mm; mucosa = 3; muscularis = 2 (autolysis)
|
Acceptable
|
|
GTEX-WK11
|
51-60
|
Male
|
GTEX-WK11-2426 |
Omentum
|
PAXgene |
1
|
3 pieces, up to 9x7mm; no significant artifacts
|
Acceptable
|
|
GTEX-WK11
|
51-60
|
Male
|
GTEX-WK11-2526 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, 11x6 & 9.5x8mm; striations retained despite fragmentation
|
Acceptable
|
|
GTEX-WK11
|
51-60
|
Male
|
GTEX-WK11-2626 |
Prostate
|
PAXgene |
1
|
2 pieces, 10x9 & 9x7mm; except for ~5% autolyzed glands, tissue is muscular; 30% adipose in 1 piece; glands = 3, muscle = 1 (autolysis)
|
Acceptable
|
|
GTEX-WK11
|
51-60
|
Male
|
GTEX-WK11-2726 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 8x3mm; subcutaneous adipose is up to 1 mm thick in 2 pieces
|
Acceptable
|
|
GTEX-WK11
|
51-60
|
Male
|
GTEX-WK11-2826 |
Colon, sigmoid
|
PAXgene |
3
|
6 pieces, up to 6.5x2mm; mucosa (unwanted) and muscle (target) in all pieces
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-0126 |
Thyroid gland
|
PAXgene |
2
|
2 pieces ~9x5mm
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-0226 |
Skin, leg
|
PAXgene |
1
|
6 pieces ~8x2.5mm, squamous epithelium is ~2-3% of thickness
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-0326 |
Adipose tissue
|
PAXgene |
1
|
2 pieces ~9x7mm
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-0426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces ~6x3mm ~10% interstial fat aggregates up to ~1mm in dimension
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-0526 |
Artery - tibial
|
PAXgene |
1
|
2 pieces ~2mm d. Good clean specimens
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-0626 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces ~6x3mm, ~10% interstitial fat
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-0726 |
Atrial appendage
|
PAXgene |
2
|
2 pieces ~10x4mm, unusally badly autolyzed
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-0826 |
Coronary artery
|
PAXgene |
1
|
2 pieces fibroadipose tissue, no vessel present
|
Unacceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-0926 |
Heart
|
PAXgene |
1
|
2 pieces ~7x4mm
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-1026 |
Lung
|
PAXgene |
3
|
2 pieces ~7x4mm. Apparent emphysematous changes but extremly autolyzed
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-1126 |
Mammary tissue (breast)
|
PAXgene |
2
|
2 pieces ~9x8mm, all fibroadipose tissue; not ductal elements noted
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-1226 |
Gastroesophageal junction
|
PAXgene |
2
|
6 pieces ~5x2mm, 20--50% muscle, squamous mucosa present
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces ~7x0.5mm, squamous mucosa 10-30% of thickness, unusually poorly preserved
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-1426 |
Esophagus - muscularis
|
PAXgene |
2
|
6 pieces ~7x2mm, all muscuarlis
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-1526 |
Aorta
|
PAXgene |
2
|
6 pieces ~8x1mm
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-1626 |
Pancreas
|
PAXgene |
3
|
2 pieces ~10x6mm, minimal adherent fat, saponification, Islets not well seen
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-1726 |
Liver
|
PAXgene |
3
|
pieces
|
Acceptable
|
|
GTEX-WL46
|
51-60
|
Male
|
GTEX-WL46-1826 |
Adrenal glands
|
PAXgene |
3
|
2 pieces ~14x2mm, all cortex, each about 30-40% fat, delineated
|
Acceptable
|
|