GTEX-WCDI
|
51-60
|
Male
|
GTEX-WCDI-0126 |
Skin, leg
|
PAXgene |
0
|
6 pieces ~8x3mm. Fat is ~50% of all sections. Squamous mucosa is ~2% of thickness. Non adipose components circled by line in representative sections for guidance.
|
Acceptable
|
|
GTEX-WCDI
|
51-60
|
Male
|
GTEX-WCDI-0226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces ~12x10mm
|
Acceptable
|
|
GTEX-WCDI
|
51-60
|
Male
|
GTEX-WCDI-0326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces 12x9. All fibroadipose tissue, no skeletal muscle present
|
Unacceptable
|
|
GTEX-WCDI
|
51-60
|
Male
|
GTEX-WCDI-0426 |
Artery - tibial
|
PAXgene |
0
|
2 pieces ~6x4mm. Arteries encircled, adherent fibroadipose tissue present on both, ~30% of both
|
Acceptable
|
|
GTEX-WCDI
|
51-60
|
Male
|
GTEX-WCDI-0526 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, one 7x3mm, one 10x1mm, both with extensive adherent fat; actual nerve delineated in both by drawing, fat is encircled
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-0126 |
Spleen
|
PAXgene |
1
|
2 pieces, 7x6.5 & 8x7mm; balanced red and white pulp
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-0226 |
Coronary artery
|
PAXgene |
1
|
2 pieces, 3x2 & 5x3mm; 50% atheromatous plaques; 10-20% peripheral fibroadipose
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-0326 |
Atrial appendage
|
PAXgene |
1
|
2 pieces, 7x6.5 & 7x6mm; 25 & 60% pericardial stroma, may be due to oblique sectioning
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-0426 |
Heart
|
PAXgene |
1
|
2 pieces, 7x6 & 6x5.5mm; <5% internal adipose
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-0526 |
Aorta
|
PAXgene |
1
|
6 pieces, up to 7x1mm; no lesions
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-0626 |
Lung
|
PAXgene |
1
|
2 pieces, 7x5 & 6x6mm; focally atelectatic
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-0726 |
Pancreas
|
PAXgene |
1
|
2 pieces, 7x6 & 6x4mm; 1 with 30% peripheral adipose & vascular tissue
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-0826 |
Omentum
|
PAXgene |
1
|
3 pieces, up to 7x7mm; lobulated structure; 1 with 10% neurovascular elements
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-0926 |
Esophagus - mucosa
|
PAXgene |
1
|
4 pieces, up to 5mm x 865um & 3.6x1.1 mm;
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1026 |
Esophagus - muscularis
|
PAXgene |
1
|
4 pieces, up to 6x3mm; 2 have 10-20% fibrous stroma
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1126 |
Gastroesophageal junction
|
PAXgene |
1
|
4 pieces, up to 8x4mm; well trimmed muscle
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1226 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, up to 5.5x2mm; 1 of 6 has muscularis only, other 5 have full thickness
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1326 |
Ileum
|
PAXgene |
2
|
4 pieces, up to 5x2mm; mostly mucosa but no lymphoid tissue present
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1426 |
Stomach
|
PAXgene |
1
|
4 pieces, up to 8x4mm; good oxyntic glands, but superficial glands sloughed
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1526 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, up to 6x3mm; 1 of 6 has pericolonic adipose; others have well trimmed muscularis
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1626 |
Prostate
|
PAXgene |
1
|
2 pieces, 7.5x7 & 9x8mm; hyperplasia
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1726 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces, 7x6 & 7.5x7mm; gynecomastia with typical dense stromal hyalinization intraductal papillary hyperplasia
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1826 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces, up to 9x3mm; subcutaneous fat is well trimmed
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-1926 |
Testis
|
PAXgene |
1
|
2 pieces, 7x5 & 7x6mm; slightly decreased spermatogensis
|
Acceptable
|
|
GTEX-WHWD
|
51-60
|
Male
|
GTEX-WHWD-2026 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 8.5x3mm; subcutaneous fat is well trimmed
|
Acceptable
|
|