GTEX-O5YW
|
51-60
|
Male
|
GTEX-O5YW-1526 |
Stomach
|
PAXgene |
1
|
3 pieces, 3.4 mm width; mucosa 0.7 mm thick; mild surface autolysis
|
Acceptable
|
|
GTEX-OHPJ
|
61-70
|
Male
|
GTEX-OHPJ-1726 |
Stomach
|
PAXgene |
2
|
Mucosa is ~25% of specimen thickness
|
Acceptable
|
|
GTEX-OHPK
|
51-60
|
Female
|
GTEX-OHPK-1526 |
Stomach
|
PAXgene |
1
|
corpus mucosa, good preservation
|
Acceptable
|
|
GTEX-OHPL
|
61-70
|
Female
|
GTEX-OHPL-1526 |
Stomach
|
PAXgene |
1
|
Chronic gastritis, intestinal metaplasia; antral mucosa
|
Acceptable
|
|
GTEX-OHPM
|
51-60
|
Male
|
GTEX-OHPM-1526 |
Stomach
|
PAXgene |
1
|
1, in some areas 0. Extremely well-preserved mucosa—25-30% of specimen thickness
|
Acceptable
|
|
GTEX-OHPN
|
61-70
|
Female
|
GTEX-OHPN-2126 |
Stomach
|
PAXgene |
3
|
Epithelium totally gone from mucosa; only lamina propria elements remain
|
Acceptable
|
|
GTEX-OIZF
|
61-70
|
Male
|
GTEX-OIZF-1526 |
Stomach
|
PAXgene |
1
|
Gastric body mucosa with little muscle and much mucosa
|
Acceptable
|
|
GTEX-OIZG
|
51-60
|
Male
|
GTEX-OIZG-1726 |
Stomach
|
PAXgene |
1
|
Mostly mucosa, no muscularis propria
|
Acceptable
|
|
GTEX-OIZH
|
51-60
|
Male
|
GTEX-OIZH-1526 |
Stomach
|
PAXgene |
1
|
Some areas approach 0—remarkably well-preserved. Approximately 50% of specimen is ‘pure’ mucosa
|
Acceptable
|
|
GTEX-OIZI
|
41-50
|
Male
|
GTEX-OIZI-1626 |
Stomach
|
PAXgene |
2
|
1 of the 3 pieces has poor mucosal preservation
|
Acceptable
|
|
GTEX-OOBJ
|
61-70
|
Male
|
GTEX-OOBJ-1526 |
Stomach
|
PAXgene |
1
|
Extremely well preserved. 1 of 4 pieces with little-no mucosa, which averages .8mm thickness in 3 pieces—two of which are 30-50%mucosa in thickness. Focal adipose areas underfixed.
|
Acceptable
|
|
GTEX-OOBK
|
41-50
|
Male
|
GTEX-OOBK-1526 |
Stomach
|
PAXgene |
1
|
1. ~3x8mm pieces; mucosa is ~25% of specimen thickness. Overall epithelium is well-preserved though luminal surface is autolyzed
|
Acceptable
|
|
GTEX-OXRK
|
51-60
|
Female
|
GTEX-OXRK-1626 |
Stomach
|
PAXgene |
2
|
deep mucosa well preserved; surface autolyzed. 7x3mm
|
Acceptable
|
|
GTEX-OXRL
|
51-60
|
Male
|
GTEX-OXRL-1526 |
Stomach
|
PAXgene |
1
|
Deep glands OK; surface autolyzed.
|
Acceptable
|
|
GTEX-OXRN
|
51-60
|
Male
|
GTEX-OXRN-1926 |
Stomach
|
PAXgene |
3
|
Severely autolyzed mucosa. Moderately autolyzed muscularis
|
Acceptable
|
|
GTEX-OXRO
|
61-70
|
Female
|
GTEX-OXRO-2426 |
Stomach
|
PAXgene |
3
|
Mucosa totally autolyzed; wall
mod. autolyzed. 3 pieces.
7.4x4.8mm.
|
Acceptable
|
|
GTEX-P44G
|
21-40
|
Male
|
GTEX-P44G-1926 |
Stomach
|
PAXgene |
3
|
Mucosa is 8-10% total thickness. 3 pieces 10x3.3mm
|
Acceptable
|
|
GTEX-P44H
|
41-50
|
Male
|
GTEX-P44H-2026 |
Stomach
|
PAXgene |
2
|
3 ~6.5mm pieces; mucosa is ~20-25% of specimen thickness
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-1526 |
Stomach
|
PAXgene |
1
|
3 ~8x3mm pieces. Foveolar cells focally simulate intestinal metaplasia because of their mucous vacuoles, but they are too regular and apical, rarely barrel-shaped; without dysplasia. Mucosa is ~20-25% of specimen thickness. No sign of an inflammatory infiltrate or atrophy of the glandular cells.
|
Acceptable
|
|
GTEX-P4PQ
|
51-60
|
Male
|
GTEX-P4PQ-1526 |
Stomach
|
PAXgene |
1
|
6 pieces; 3 with mucosa, ~1.2x5mm, well preserved
|
Acceptable
|
|
GTEX-P4QR
|
61-70
|
Male
|
GTEX-P4QR-1926 |
Stomach
|
PAXgene |
3
|
6 ~8x3mm pieces. Epithelium totally autolyzed; mucosal stroma partly sloughed. Areas of poor fixation with tears/holes
|
Acceptable
|
|
GTEX-P4QS
|
61-70
|
Male
|
GTEX-P4QS-1526 |
Stomach
|
PAXgene |
2
|
6 ~6X3.5mm pieces. Epithelium/mucosa poorly preserved , ~10-20% specimen thickness
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-1526 |
Stomach
|
PAXgene |
1
|
2 pieces. Mucosa extremely well-preserved, ~10 of thickness. Focal poor fixation with tears
|
Acceptable
|
|
GTEX-P78B
|
41-50
|
Female
|
GTEX-P78B-1826 |
Stomach
|
PAXgene |
1
|
6 pieces ~8.5x2mm. Slight to focally moderate chronic gastritis
|
Acceptable
|
|
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2526 |
Stomach
|
PAXgene |
2
|
2-3 (mucosa);1-2 (muscularis), 6 ~10x2mm pieces. Mucosa is ~25% of aliquot thickness; near-total autolysis
|
Acceptable
|
|