GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2026 |
Stomach
|
PAXgene |
3
|
6 ~7.5x3mm pieces. Autolyzed mucosa is ~3-45% of thickness
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2126 |
Colon, transverse
|
PAXgene |
3
|
6 ~9x1.5mm pieces. Epithelium totally autolyzed; mucosal stroma is ~10-12% of thickness
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2226 |
Ovary
|
PAXgene |
2
|
2 9x8mm aliquots. Post-menopausal-appearing, remote corpora albicantia present
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2326 |
Fallopian tube
|
PAXgene |
2
|
2 ~6x3mm aliquots. Lumen is ~0.4.x0.3mm in the center of each
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2426 |
Uterus
|
PAXgene |
2
|
2 ~8.5x3mm aliquots. Autolyzed, atrophic endometrium is <10% of both.
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2526 |
Vagina
|
PAXgene |
2
|
6 ~7x3mm pieces; squamous mucosa, focally beginning to slough, is ~2-3% of thickness
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2626 |
Cervix - ectocervix
|
PAXgene |
2
|
4 ~6x4mm pieces, 2 with ~ 0.1mm edge of squamous mucosa, 2 with no significant mucosal surface noted.
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2726 |
Cervix - endocervix
|
PAXgene |
2
|
4 ~6x5mm pieces. Only one has a ~3x2mm focus of endocervical glands, partially autolyzed. One has a 3x0.1mm edge of squamous mucosa; the other two lack a mucosal surface.
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2826 |
Urinary bladder
|
PAXgene |
2
|
6 ~8x5mm pieces. Urotherlium nearly completely sloughed; muscularis/adipose tissue is >99% of sections
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-2926 |
Brain - cortex
|
PAXgene |
1
|
4 ~6x4mm aliquots. Some have a ~ 0.1mm layer of adherent pia arachnoid
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-3026 |
Brain - cerebellum
|
PAXgene |
1
|
4 ~5x5mm aliquots
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-3126 |
Pituitary gland
|
PAXgene |
1
|
1 ~ 6x4mm aliquot
|
Acceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0126 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~12x7mm aliquots, good clean specimens, <5% interstitial fat
|
Acceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0226 |
Adipose tissue
|
PAXgene |
1
|
2 ~8x7mm aliquots, extreme separation falsely implies larger dimensions
|
Acceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0326 |
Nerve - tibial
|
PAXgene |
1
|
2 ~5x3mm aliquots; good clean specimens
|
Acceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0426 |
Lung
|
PAXgene |
3
|
2 9x7.5mm aliquots. Diffuse infiltrative process, suspect squamous carcinoma/fibrosis. Severe autolysis hampers evaluation; need slides to review
|
Unacceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0526 |
Aorta
|
PAXgene |
1
|
6 ~8.5x1.5mm pieces, some with 0.5-1mm attached fibroadipose tissue on serosal surfaces
|
Acceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0626 |
Esophagus - muscularis
|
PAXgene |
1
|
6 6.5x3mm pieces. Foci of squamous mucosa, more than above? Switched aliquots?
|
Unacceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0726 |
Esophagus - mucosa
|
PAXgene |
1
|
6 ~6x3mm pieces. Rare minute foci of squamous mucosa
|
Unacceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0826 |
Liver
|
PAXgene |
2
|
2 ~9x8mm aliquots, areas of chronic passive congestion
|
Acceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-0926 |
Spleen
|
PAXgene |
3
|
2 ~10x9mm aliquots, marked congestion of red pulp
|
Acceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1026 |
Pancreas
|
PAXgene |
3
|
2 ~10x9mm aliquots, marked diffuse saponification/autolysis
|
Acceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1126 |
Adrenal glands
|
PAXgene |
2
|
2 ~9x8mm aliquots; one is ~85% fat; cannot be used; unable to monitor corresponding aliquot
|
Unacceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1226 |
Pituitary gland
|
PAXgene |
2
|
10x5mm aliquot with 3.5x2mm portion of neuohypophysis appended
|
Acceptable
|
|
GTEX-QVJO
|
61-70
|
Female
|
GTEX-QVJO-1325 |
Brain - cerebellum
|
PAXgene |
2
|
4 ~6x5mm aliquots
|
Acceptable
|
|