GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1626 |
Colon, transverse
|
PAXgene |
2
|
6 pieces up to ~11x4.7 mm
|
Acceptable
|
|
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1726 |
Skin, leg
|
PAXgene |
1
|
6 pieces, up to 9x3.6 mm
|
Acceptable
|
|
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1826 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, ~10x10 mm; large central defects, probably fixation artifacts
|
Acceptable
|
|
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1926 |
Artery - tibial
|
PAXgene |
1
|
2 pieces, each ~2.5x3.5 mm; minimal adipose
|
Acceptable
|
|
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-2026 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces , each 3.8x3mm; minimal adipose
|
Acceptable
|
|
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-2126 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces up to ~11x6mm
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0126 |
Skin, leg
|
PAXgene |
1
|
6 ~7x1.5mm pieces. Squamous epithelium is ~ 2-4% of thickness%
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0226 |
Adipose tissue
|
PAXgene |
1
|
2 ~8x7mm aliquots, focal areas centrally are under-fixed
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0326 |
Nerve - tibial
|
PAXgene |
1
|
2 ~6.5x3.5mm aliquots. ~0.5mm rim of fat around both.
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0426 |
Artery - tibial
|
PAXgene |
1
|
2 ~2.5x1.5mm aliquots
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0526 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~8x6mm pieces, ~5% interstitial fat
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0626 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 ~10x8mm pieces, both with atrophic TDLUs, one with more adipose tissue; the other with more stroma
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0726 |
Coronary artery
|
PAXgene |
1
|
2 aliquots ~3 x 1.5mm. Only one has a ~0.66mm coronary artery section; the rest is adipose tissue; artery is less than 10% of total tissue area
|
Unacceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0826 |
Heart
|
PAXgene |
1
|
2 ~8x6.5mm aliquots , patchy interstitial fibrosis in each
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-0926 |
Lung
|
PAXgene |
2
|
2 ~7x6mm aliquots, evidence of chronic pulmonary congestion (aggregates of hemosiderin-laden macrophages)
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1026 |
Aorta
|
PAXgene |
1
|
6 ~9x1.5mm pieces, patchy atheromatous deposition
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1126 |
Liver
|
PAXgene |
2
|
2 ~9x7mm aliquots. Established cirrhosis with steatohepatitis, diffuse
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1226 |
Thyroid gland
|
PAXgene |
1
|
2 `7x8.5mm aliquots, relatively ‘clean’ specimens
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1326 |
Esophagus - muscularis
|
PAXgene |
1
|
6 ~6.5x2.5mm pieces
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1426 |
Esophagus - mucosa
|
PAXgene |
2
|
6 ~6x2mm pieces. Squamous mucosa is unusually poorly preserved with superficial sloughing; it is ~ 5-10% of thickness
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1526 |
Spleen
|
PAXgene |
2
|
2 ~7.5x6.5mm aliquots, foci of adherent extraspenic vascular/fibrous tissue present (~4x1mm)
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1626 |
Adrenal glands
|
PAXgene |
2
|
2 ~17x8mm aliquots, each with a 1-2mm rim of fat surrounding the majority of each
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1726 |
Kidney - cortex
|
PAXgene |
2
|
6 ~6.5x3.5mm pieces. Tubules more autolyzed than glomeruli
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1826 |
Kidney - cortex
|
PAXgene |
2
|
2 ~8x7mm aliquots—renal cortex, not medulla
|
Acceptable
|
|
GTEX-QDT8
|
21-40
|
Female
|
GTEX-QDT8-1926 |
Pancreas
|
PAXgene |
3
|
2 ~9x9mm aliquots, ~10% adherent fat with saponification
|
Acceptable
|
|