GTEX-144GM
|
21-40
|
Male
|
GTEX-144GM-1826 |
Skin, leg
|
PAXgene |
0
|
6 pieces, no dermal fat, squamous epithelium is ~50 microns
|
Acceptable
|
|
GTEX-144GM
|
21-40
|
Male
|
GTEX-144GM-1926 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, ~10% vascular/connective tissue, delineated
|
Acceptable
|
|
GTEX-144GM
|
21-40
|
Male
|
GTEX-144GM-2026 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, trace interstitial fat
|
Acceptable
|
|
GTEX-144GM
|
21-40
|
Male
|
GTEX-144GM-2126 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, excellent clean specimen
|
Acceptable
|
|
GTEX-144GM
|
21-40
|
Male
|
GTEX-144GM-2226 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, excellent clean specimen
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-0126 |
Spleen
|
PAXgene |
1
|
2 pieces; moderate congestion
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-0226 |
Adrenal glands
|
PAXgene |
1
|
2 pieces; 40% external fat
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-0326 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; no lesions; medulla in 2 small fragments [annotated]
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-0426 |
Thyroid gland
|
PAXgene |
1
|
2 pieces; 2.5mm centyral focus of skeletal muscle [annotated]
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-0526 |
Aorta
|
PAXgene |
1
|
6 pieces; 3 of 6 have untrimmed adventitia up to 0.5mm thick
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-0626 |
Heart
|
PAXgene |
1
|
2 pieces; enlarged nuclei; few small patchy fibrous foci
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-0726 |
Atrial appendage
|
PAXgene |
1
|
2 pieces; 40% external fat on 1; muscle resembles ventricular myocardium rather than atrial
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-0826 |
Coronary artery
|
PAXgene |
1
|
2 pieces; 1 is 60% fat, 40 % myocardium, no artery; other has 2 small arteries (1mm & 0.7mm) and 90% fat. LCM
|
Unacceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-0926 |
Lung
|
PAXgene |
1
|
2 pieces; fibrosis, emphysema, pigmented macrophages
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; prominent submucosal mucous glands in 4 pieces up to 10% area [annotated]
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1126 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; well trimmed except for submucosal glands in 1 piece (5%) [annotated]
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1226 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; all are gastric mucosa only
|
Unacceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1326 |
Stomach
|
PAXgene |
1
|
6 pieces; 4 have full thickness wall, 2 are without muscularis
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1426 |
Pancreas
|
PAXgene |
1
|
2 pieces; multiple foci of fibrosis (probable healed pancreatitis); 30% external fat on 1, 20% on other
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1526 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; 3 have deep pockets of fat up to 1.3mm across
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1626 |
Ileum
|
PAXgene |
1
|
6 pieces; 5 have abundant mucosal lymphoid tissue, but 5 have muscularis (not target). LCM
|
Unacceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1726 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; 2 lack muscularis LCM
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1826 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; 3 have mucosa (not target) as well as muscularis. LCM
|
Unacceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-1926 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; fibrofatty tissue without mammary ducts
|
Acceptable
|
|
GTEX-145MN
|
21-40
|
Male
|
GTEX-145MN-2026 |
Minor salivary glands
|
PAXgene |
1
|
2 pieces; salivary glands in both but comprise only 30% & 5% of samples, remainder is skin and muscle. LCM
|
Unacceptable
|
|