GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-1626 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; essentially well trimmed target muscularis; trace rim of serosa on one section (outlined)
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-1726 |
Stomach
|
PAXgene |
2
|
6 pieces; mild to moderate autolysis; gastric mucosa and muscularis
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-1826 |
Adrenal glands
|
PAXgene |
2
|
2 pieces; moderate to severe focal autolysis of adrenal cortex, medulla; rim of adherent fat
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-1926 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; one composed of fibrotic stroma and ductal structures and other composed of adipose tissue and fibrotic stroma with ductal structures suggestive of gynecomastoid stromal and glandular hyperplasia
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2026 |
Liver
|
PAXgene |
1
|
2 pieces; expanded portal areas with bile duct proliferation, lymphocytic infiltration and fibrosis with bridging consistent with cirrhosis; congestion; one piece contains large and thick walled vessels (outlined)
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2126 |
Spleen
|
PAXgene |
2
|
2 pieces; congestion; one piece contains large, thick walled vessles (outlined)
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2226 |
Kidney - cortex
|
PAXgene |
1
|
6 pieces; mild to moderate autolysis; advanced arterio and arteriolonephrosclerosis and diabetic glomerulopathy; majority of glomeruli hyalinized; chronic interstitial inflammation; end stage renal disease
|
Unacceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2326 |
Pancreas
|
PAXgene |
2
|
2 pieces; interstitial fibrosis with microlobulation; rare Langerhans islets (rep outlined); thick walled vessels (arrows)
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2426 |
Colon, transverse
|
PAXgene |
2
|
6 pieces; moderate to severe mucosal autolysis; congestion; preserved muscularis
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2526 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; target muscularis with partial rim of submucosa/serosa
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2626 |
Ileum
|
PAXgene |
3
|
6 pieces; autolyzed mucosa and too few of residual lymphoid aggregates to warrant analysis (<10%)
|
Unacceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2726 |
Omentum
|
PAXgene |
1
|
2 pieces; lobulated mature adipose tissue; one piece contains larger vessel (arrow)
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2826 |
Prostate
|
PAXgene |
1
|
2 pieces; one piece composed of fibromuscular stroma and a few glandular structures (outlined); other contains fibromucular stroma and glandular component
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-2926 |
Brain - cerebellum
|
PAXgene |
1
|
4 pieces; Purkinje cells well visualized
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-3026 |
Brain - cortex
|
PAXgene |
1
|
4 pieces; mild to moderate autolysis
|
Acceptable
|
 |
GTEX-1IL2U
|
61-70
|
Male
|
GTEX-1IL2U-3126 |
Pituitary gland
|
PAXgene |
1
|
1 piece; mild to moderate autolysis of adenohypophysis; attached rim of dense fibrovasular tissue with small calcifications likely dura (outlined)
|
Acceptable
|
 |
GTEX-1IL2V
|
61-70
|
Male
|
GTEX-1IL2V-0126 |
Skin, leg
|
PAXgene |
0
|
6 pieces, no dermal fat; squamous epithelium is ~50 microns
|
Acceptable
|
 |
GTEX-1IL2V
|
61-70
|
Male
|
GTEX-1IL2V-0226 |
Adipose tissue
|
PAXgene |
0
|
2 pieces, ~10-15% fascia, vascular, peripheral nerve elements, rep delineated
|
Acceptable
|
 |
GTEX-1IL2V
|
61-70
|
Male
|
GTEX-1IL2V-0326 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, nubbin of adherent fat/vascular elements up to ~1mm, delineated
|
Acceptable
|
 |
GTEX-1IL2V
|
61-70
|
Male
|
GTEX-1IL2V-0426 |
Artery - tibial
|
PAXgene |
0
|
2 pieces, ath atherosis occludes ~30% of lumen, rep delineated
|
Acceptable
|
 |
GTEX-1IL2V
|
61-70
|
Male
|
GTEX-1IL2V-0526 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces, interstitial fat is ~5-10% of aliquot
|
Acceptable
|
 |
GTEX-1IL2V
|
61-70
|
Male
|
GTEX-1IL2V-0626 |
Thyroid gland
|
PAXgene |
0
|
2 pieces, no abnormalities
|
Acceptable
|
 |
GTEX-1IL2V
|
61-70
|
Male
|
GTEX-1IL2V-0726 |
Lung
|
PAXgene |
1
|
2 pieces, moderate congestion
|
Acceptable
|
 |
GTEX-1IL2V
|
61-70
|
Male
|
GTEX-1IL2V-0826 |
Aorta
|
PAXgene |
1
|
6 pieces, atherosis up to ~1.5mm
|
Acceptable
|
 |
GTEX-1IL2V
|
61-70
|
Male
|
GTEX-1IL2V-0926 |
Liver
|
PAXgene |
1
|
2 pieces, minimal macrovesicular steatosis (~10% of parenchyma), moderate passive congestion
|
Acceptable
|
 |