GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0426 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, ~6x3mm. Squmous mucosa well-preserved, ~8-10% of thickness
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0526 |
Spleen
|
PAXgene |
2
|
2 aliquots, ~9X6mm
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0626 |
Urinary bladder
|
PAXgene |
2
|
4 pieces, ~6x4mm, no visible urothelium; LDCC NOTE: 2 are ~50% fat, encircled
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0726 |
Pancreas
|
PAXgene |
1
|
2 aliquots ~8x6mm. LDACC NOTE: 2 foci of low grade ductal dyplasia, ~0.3mm in dimensions noted in one aliquot, ensquared. Good islets, representative ones encircled. Overall excellent preservation with minimal fat.
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0826 |
Stomach
|
PAXgene |
1
|
6 pieces, ~10x2mm. Mucosa extremely well-preserved, up to 50% of thickness in well-oriented pieces.
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-0926 |
Colon, transverse
|
PAXgene |
1
|
6 pieces, ~8x3mm, only three with visible mucosa, poorly oriented
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-1026 |
Prostate
|
PAXgene |
1
|
2 aliquots, ~10x7mm, prominent nodular glandular hyperplasia ensquared
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-1126 |
Testis
|
PAXgene |
1
|
2 aliquots, ~10x8mm. Spermatogenesis appears present but reduced
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-1226 |
Skin, leg
|
PAXgene |
0
|
6 pieces, ~7x2.5mm. Squamous epithelium is ~1-3% of thickness
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-1326 |
Adipose tissue
|
PAXgene |
0
|
2 aliquots, ~9x6mm
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-1426 |
Muscle, skeletal
|
PAXgene |
0
|
2 aliquots, ~5x4mm, one additional fragment ~3.5mm. Minimal interstitial fat
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-1526 |
Nerve - tibial
|
PAXgene |
0
|
2 aliquots, ~5x3mm, discontinuous adherent rim of fat, up to 0.5mm thickness
|
Acceptable
|
|
GTEX-S95S
|
51-60
|
Male
|
GTEX-S95S-1626 |
Artery - tibial
|
PAXgene |
0
|
2 aliquots, ~2mm d. Small tags of focally adherent fibrous tissue ensquared.
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-0126 |
Spleen
|
PAXgene |
1
|
2 pieces 6x6 & 7x4 mm; moderately congested
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-0226 |
Coronary artery
|
PAXgene |
1
|
2 pieces 8x5 & 7x5 mm; eccentric plaques with wide lumens; 40% external adipose
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-0326 |
Aorta
|
PAXgene |
1
|
6 pieces up to 8x2 mm; no plaques
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-0426 |
Heart
|
PAXgene |
1
|
2pieces 9x6 & 8x7 mm; patchy fibrosis <10%(old infarcts)
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-0526 |
Lung
|
PAXgene |
1
|
2 pieces 8x8 mm; no inflammation
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-0626 |
Kidney - medulla
|
PAXgene |
2
|
6 pieces up to 10x6 mm; 3 are pure medulla, 3 are mixed medulla and cortex; cortex shows severe vascular lesions as in 0725; label medulla, consider it mixed
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-0726 |
Kidney - cortex
|
PAXgene |
2
|
2 pieces 10x8 & 9x8 mm; cortex in both, 20% medulla in one; severe glomerular and vascular sclerosis; no normal glomeruli present; relabel as cortex
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-0826 |
Adrenal glands
|
PAXgene |
1
|
2 pieces 12x6 & 9x6 mm; mostly cortex; >50% poorly fixed adipose; several large nerves in one piece, ~10%.
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-0926 |
Pancreas
|
PAXgene |
1
|
2 pieces 11x8 & 8x8 mm; ~50 % adipose intermingled with parenchyma; islets present
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-1026 |
Urinary bladder
|
PAXgene |
1
|
6 pieces up to 9x4.8 mm; little mucosa sampled; mild chronic inflammation
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-1126 |
Thyroid gland
|
PAXgene |
1
|
2 pieces 11x9 & 10x7 mm; microfollicular adenomatoid nodules
|
Acceptable
|
|
GTEX-SIU7
|
51-60
|
Male
|
GTEX-SIU7-1226 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces up to 7x4 mm; all with slightly hyperplastic epithelium;
|
Acceptable
|
|