GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-1426 |
Colon, transverse
|
PAXgene |
1
|
3 ~9x2-2.5mm pieces. Mucosa well preserved, 10-15% of thickness
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-1526 |
Stomach
|
PAXgene |
1
|
3 ~8x3mm pieces. Foveolar cells focally simulate intestinal metaplasia because of their mucous vacuoles, but they are too regular and apical, rarely barrel-shaped; without dysplasia. Mucosa is ~20-25% of specimen thickness. No sign of an inflammatory infiltrate or atrophy of the glandular cells.
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-1626 |
Muscle, skeletal
|
PAXgene |
1
|
2 ~8x7mm pieces, 50% fat. ? myositis/atrophic process. Withered muscle, fibrosis with fatty infiltration
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-1726 |
Nerve - tibial
|
PAXgene |
1
|
2 ~1-1.5mm d. sections. ~40-50% both specimens are rinds of adipose tissue
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-1826 |
Artery - tibial
|
PAXgene |
1
|
2 ~1.5mm diameter sections
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-1926 |
Urinary bladder
|
PAXgene |
2
|
3 ~9x2m pieces. Urothelium fairly well preserved; 4-5% of thickness. Areas of poor fixation
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-2026 |
Uterus
|
PAXgene |
1
|
~7x6mm piece; a 3.3x1.2mm area of weakly proliferative stroma/glands on one edge
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-2126 |
Cervix - endocervix
|
PAXgene |
0
|
~6x5mm. No squamous mucosa. A 5x1.3mm area of endocervical glands on one edge
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-2226 |
Cervix - ectocervix
|
PAXgene |
0
|
~10x3.5mm. No endocervical glands. 55m thick edge of sqaumous mucosa on one edge, ~1.5% of thickness1.3
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-2326 |
Fallopian tube
|
PAXgene |
1
|
Not tube, fibrovascular tissue
|
Unacceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-2426 |
Ovary
|
PAXgene |
1
|
15x9mm, postmenopausal
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-2526 |
Vagina
|
PAXgene |
0
|
3 ~6x2.5mm pieces. Non keratinizing squamous mucosa is ~2-3% of specimen thickness
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-2626 |
Thyroid gland
|
PAXgene |
1
|
8x7mm- Not thyroid—capsule and peripheral sinuses; favor lymph node
|
Unacceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-3026 |
Coronary artery
|
PAXgene |
1
|
2 ~2mm d sections, one with approximately equal amount of fat on edge (~2x2mm)
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-3126 |
Fallopian tube
|
PAXgene |
1
|
2 ~2.5mm pieces. Epithelium well preserved.
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-0126 |
Skin, leg
|
PAXgene |
1
|
6 ~5-6x 2.5mm pieces. Squamous epithelium is ~1% of specimen thickness
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-0226 |
Adipose tissue
|
PAXgene |
1
|
2 pieces, ~8x8mm. One with focal central under-fixation
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-0526 |
Lung
|
PAXgene |
1
|
2 ~7x5mm pieces. Chronic congestion, ? diffuse alveolar damage sequence
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces ~4x4mm. Squamous mucosa is 10-15% of thickness
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces, ~5-10x4mm.
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-0926 |
Spleen
|
PAXgene |
2
|
2 ~9x5mm pieces.
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-1026 |
Pancreas
|
PAXgene |
1
|
2 ~ 7x6mm pieces, clean specimens, no fat
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-1326 |
Adrenal glands
|
PAXgene |
1
|
2 ~9x5mm pieces, well-preserved
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-1426 |
Colon, transverse
|
PAXgene |
2
|
6 well-preserved pieces, ~7x2mm. Mucosa is ~20-25% thickness. Areas of under-fixation with tears
|
Acceptable
|
|
GTEX-P4QT
|
41-50
|
Female
|
GTEX-P4QT-1526 |
Stomach
|
PAXgene |
1
|
2 pieces. Mucosa extremely well-preserved, ~10 of thickness. Focal poor fixation with tears
|
Acceptable
|
|