GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-0826 |
Liver
|
PAXgene |
1
|
9.7x6.7mm. Patchy macrovesicular steatosis, 3-40%. Focal central areas appear under-fixed with tears/holes.
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-0926 |
Esophagus - mucosa
|
PAXgene |
1
|
3 10x1mm pieces. Mucosa is ~10% of specimen thickness
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1126 |
Spleen
|
PAXgene |
2
|
8.5x6.7mm. Areas of poor/under fixation
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1226 |
Pancreas
|
PAXgene |
1
|
Under -fixed adipose tissue only, no pancreas
|
Unacceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1426 |
Urinary bladder
|
PAXgene |
1
|
Two 6x3.5mm pieces. Foci of central fat; focally poorly fixed. Mucosa completely sloughed
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1526 |
Fallopian tube
|
PAXgene |
1
|
No tube: post menopausal ovary, 9.3x7.1mm
|
Unacceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1626 |
Ovary
|
PAXgene |
1
|
Not ovary: fibrovascular, adipose, and neural tissue
|
Unacceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1726 |
Cervix - ectocervix
|
PAXgene |
1
|
5 x 3.2mm. Essentially all stroma, single cell layer of degenerating epithelium along one edge
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1826 |
Cervix - endocervix
|
PAXgene |
1
|
4.5 x 2.5mm stromal aliquot. No glands present.
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-1926 |
Uterus
|
PAXgene |
1
|
6x8mm. atrophic endometrial stroma is ~30% of thickness. No viable glands.
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-2126 |
Adrenal glands
|
PAXgene |
3
|
11x8mm. Central 80% is fat, 2.2x3.8mm nodule of cortex on one edge; thin 0.5mm rim of cortex on opposite edge
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-2226 |
Colon, transverse
|
PAXgene |
3
|
2 pieces, 6x1mm. Epithelium with near-total autolysis
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-2326 |
Muscle, skeletal
|
PAXgene |
1
|
7.4x 4.5mm & 5.3x3.4mm. Sparse interfibrillar fat, a few foci of which are under fixed
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-2426 |
Artery - tibial
|
PAXgene |
1
|
4.7x1.5mm. Good clean specimen, minimal atherosclerotic damage
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-2526 |
Nerve - tibial
|
PAXgene |
1
|
4.5x2.7mm nerve with surrounding rim of fat .2-.8mm in thickness
|
Acceptable
|
|
GTEX-OXRP
|
61-70
|
Female
|
GTEX-OXRP-2626 |
Kidney - medulla
|
PAXgene |
2
|
10x6.3mm. Approximately 60% contains glomeruli (cortex). Area under ovals is pure tubules.
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-0126 |
Skin, leg
|
PAXgene |
1
|
3 ~8x1.5mm pieces. Squamous epithelium is 1-2% of thickness
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-0226 |
Adipose tissue
|
PAXgene |
1
|
~10x10mm. Central 60% unfixed with large hole/tear
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-0326 |
Heart
|
PAXgene |
1
|
8x4.5mm. Contraction bands and nuclear hypertrophy c/w ischemic damage
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-0426 |
Aorta
|
PAXgene |
1
|
3 ~11x1.5mm pieces
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-0526 |
Lung
|
PAXgene |
1
|
~9x8mm. Dense areas granulomatous pneumonitis /hemorrhage. Foreign body giant cells, and lipoid-like structures. Probable Aspiration pneumonia.
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
3 ~6x2mm pieces. Squamous mucosa is 20-25% of thickness
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-0726 |
Esophagus - muscularis
|
PAXgene |
0
|
3 ~8.5x3.5mm pieces; small floater of ?bronchial mucosa
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-0926 |
Spleen
|
PAXgene |
2
|
9x7mm, areas of under-fixation
|
Acceptable
|
|
GTEX-P4PP
|
21-40
|
Female
|
GTEX-P4PP-1026 |
Pancreas
|
PAXgene |
1
|
~9x9mm, well fixed, about 20% intermingled fat
|
Acceptable
|
|