GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0826 |
Heart
|
PAXgene |
1
|
2 ~7.5x5.5mm aliquots, early ischemic changes (contraction bands)
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-0926 |
Aorta
|
PAXgene |
0
|
6 ~7x2mm pieces, several with up to 0.5mm layer of adherent serosal adipose/fibrous tissue
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 ~6x1.5mm pieces. Squamous mucosa is ~10-15% of thickness
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1126 |
Esophagus - muscularis
|
PAXgene |
1
|
6 ~8x3mm pieces
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1226 |
Spleen
|
PAXgene |
2
|
2 ~8.5x6mm aliquots; red pulp markedly congested
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1326 |
Adrenal glands
|
PAXgene |
1
|
2 ~12x3.5mm aliquots. Adherent 1mm layer of fat on both
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1426 |
Kidney - cortex
|
PAXgene |
1
|
6 ~7x3.5mm pieces; glomeruli and tubules reasonably well- preserved
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1526 |
Kidney - cortex
|
PAXgene |
1
|
2 ~7x7mm aliquots; one all cortex, one is 90% cortex and 10% medulla—may be used if reclassified as renal cortex. Glomeruli and tubules reasonably well preserved
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1626 |
Pancreas
|
PAXgene |
1
|
2 ~8x8mm aliquots; one is >80% fat; cannot use as there is no way of knowing which is which in LDACC samples
|
Unacceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1726 |
Muscle, skeletal
|
PAXgene |
0
|
2 ~9x7.5mm aliquots. Interstitial fat ~10% of specimens
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1826 |
Liver
|
PAXgene |
1
|
2 ~8x8mm aliquots, prominent congestion
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-1926 |
Stomach
|
PAXgene |
1
|
6 8x2.5mm pieces; mucosa well preserved generally, 20-30% of thickness
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2026 |
Colon, transverse
|
PAXgene |
2
|
6 ~8x2mm pieces; mucosa is 10-20% of thickness
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2126 |
Prostate
|
PAXgene |
1
|
2 ~8x8mm aliquots. Prominent glandular hyperplasia; foci of cystic atrophy
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2226 |
Urinary bladder
|
PAXgene |
1
|
6 ~8.5x4mm pieces; urothelium completely sloughed/denuded
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2326 |
Skin, leg
|
PAXgene |
0
|
6 ~8.5x2.5mm pieces; squamous epithelium is ~1-3% of thickness
|
Acceptable
|
 |
GTEX-QXCU
|
51-60
|
Male
|
GTEX-QXCU-2426 |
Adipose tissue
|
PAXgene |
1
|
2 ~8x8mm aliquots
|
Acceptable
|
 |
GTEX-R53T
|
51-60
|
Female
|
GTEX-R53T-0126 |
Spleen
|
PAXgene |
1
|
2 aliquots, ~ 7x6mm. Moderate congestion of red pulp
|
Acceptable
|
 |
GTEX-R53T
|
51-60
|
Female
|
GTEX-R53T-0226 |
Adrenal glands
|
PAXgene |
1
|
2 aliquots, ~9x7mm. Foci of chronic inflammation
|
Acceptable
|
 |
GTEX-R53T
|
51-60
|
Female
|
GTEX-R53T-0326 |
Liver
|
PAXgene |
1
|
2 aliquots, ~8x7mm. Moderate congestion
|
Acceptable
|
 |
GTEX-R53T
|
51-60
|
Female
|
GTEX-R53T-0426 |
Pancreas
|
PAXgene |
1
|
2 aliquots, ~10x7mm. Remarkably well-preserved, minimal fat (<5%)
|
Acceptable
|
 |
GTEX-R53T
|
51-60
|
Female
|
GTEX-R53T-0526 |
Thyroid gland
|
PAXgene |
1
|
2 ~9x7mm aliquots. Scattered colloid cysts, up to 3mm in dimensions
|
Acceptable
|
 |
GTEX-R53T
|
51-60
|
Female
|
GTEX-R53T-0626 |
Lung
|
PAXgene |
1
|
2 aliquots, ~9x5mm. Patchy mild edema, a few hyaline membranes
|
Acceptable
|
 |
GTEX-R53T
|
51-60
|
Female
|
GTEX-R53T-0726 |
Coronary artery
|
PAXgene |
0
|
2 aliquots, ~3mm d, mild atherosclerosis (<20% occlusion), one aliquot with nubbin of fat
|
Acceptable
|
 |
GTEX-R53T
|
51-60
|
Female
|
GTEX-R53T-0826 |
Aorta
|
PAXgene |
1
|
6 pieces, ~8.5x1mm; 4 of 6 have ~1.5mm layer of adherent fibroadipose tissue
|
Acceptable
|
 |