GTEX-1HGF4
|
61-70
|
Male
|
GTEX-1HGF4-0226 |
Omentum
|
PAXgene |
1
|
2 pieces; 10% fibrous content in 1 piece; minimal in the other
|
Acceptable
|
 |
GTEX-1HGF4
|
61-70
|
Male
|
GTEX-1HGF4-2926 |
Pituitary gland
|
PAXgene |
1
|
1 piece; no neural tissue in this cut
|
Acceptable
|
 |
GTEX-1HR98
|
61-70
|
Male
|
GTEX-1HR98-0826 |
Coronary artery
|
PAXgene |
1
|
2 pieces; extensive fibrocalcific plaques in 1, less in the other; well trimmed
|
Acceptable
|
 |
GTEX-1HR98
|
61-70
|
Male
|
GTEX-1HR98-0926 |
Heart
|
PAXgene |
1
|
2 pieces; 50% fibrous scar in 1 piece, 10% in other; consistent with old infarcts
|
Acceptable
|
 |
GTEX-1HR98
|
61-70
|
Male
|
GTEX-1HR98-1126 |
Aorta
|
PAXgene |
1
|
6 pieces; severe focal plaques with a large calcific deposit in 1 piece
|
Acceptable
|
 |
GTEX-1HR98
|
61-70
|
Male
|
GTEX-1HR98-1626 |
Liver
|
PAXgene |
2
|
2 pieces; moderate increase in periportal fibrous tissue, but little bridging and no nodules
|
Acceptable
|
 |
GTEX-1HR9M
|
61-70
|
Male
|
GTEX-1HR9M-0526 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; minimal intimal thickening; calcific foci in 1 piece; well trimmed
|
Acceptable
|
 |
GTEX-1HR9M
|
61-70
|
Male
|
GTEX-1HR9M-0726 |
Heart
|
PAXgene |
1
|
2 pieces; foci of polymorphs consistent with myocardial infarction or endocarditis (arrowed) in 1 piece
|
Acceptable
|
 |
GTEX-1HR9M
|
61-70
|
Male
|
GTEX-1HR9M-1826 |
Ileum
|
PAXgene |
1
|
6 pieces; preserved lymphoid nodules in each piece, but comprise <50%
|
Acceptable
|
 |
GTEX-1HR9M
|
61-70
|
Male
|
GTEX-1HR9M-2226 |
Skin, suprapubic
|
PAXgene |
1
|
6 pieces; thick collagen bands in deep dermis; virtually no dermal fat
|
Acceptable
|
 |
GTEX-1HR9M
|
61-70
|
Male
|
GTEX-1HR9M-2826 |
Brain - cerebellum
|
PAXgene |
1
|
2 fragmented pieces; focal reduction in Purkinje cells
|
Acceptable
|
 |
GTEX-1HSKV
|
61-70
|
Male
|
GTEX-1HSKV-1526 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; glomeruli in all sections
|
Acceptable
|
 |
GTEX-1HSMP
|
61-70
|
Male
|
GTEX-1HSMP-2126 |
Stomach
|
PAXgene |
1
|
6 pieces, approaches score "2" in pfoci; mucosa up to ~0.7mm, ~25-30% thickness
|
Acceptable
|
 |
GTEX-1HUB1
|
61-70
|
Male
|
GTEX-1HUB1-1026 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; moderate interstitial fibrosis; tubules severely autolyzed, glomeruli in relatively good shape
|
Acceptable
|
 |
GTEX-1HUB1
|
61-70
|
Male
|
GTEX-1HUB1-1526 |
Omentum
|
PAXgene |
1
|
2 pieces; 10% fibrovascular content in 1, 1% in other
|
Acceptable
|
 |
GTEX-1HUB1
|
61-70
|
Male
|
GTEX-1HUB1-2026 |
Testis
|
PAXgene |
1
|
2 pieces; active spermatogenesis; rete testis sampled in 1 piece [10%, outlined]
|
Acceptable
|
 |
GTEX-1I19N
|
61-70
|
Male
|
GTEX-1I19N-1326 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; epithelium sloughing/absent in some sections; muscularis (not target) also present
|
Unacceptable
|
 |
GTEX-1I19N
|
61-70
|
Male
|
GTEX-1I19N-2626 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; markedly autolyzed mucosa (3) and muscularis (2) with attached fat up to 40% in 3 pieces (outlined)
|
Acceptable
|
 |
GTEX-1I1GP
|
51-60
|
Male
|
GTEX-1I1GP-1526 |
Liver
|
PAXgene |
1
|
2 pieces, macrovesicular steatosis in ~25% of parenchyma, mild/moderate passive congestion
|
Acceptable
|
 |
GTEX-1I1GQ
|
51-60
|
Male
|
GTEX-1I1GQ-0426 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces; ~5% internal fat and trace of external fat; mild focal lymphocytic infiltrate in perineural tissue (outlined)
|
Acceptable
|
 |
GTEX-1I1GT
|
61-70
|
Female
|
GTEX-1I1GT-1826 |
Ileum
|
PAXgene |
1
|
6 pieces; predominantly partially autolyzed mucosa and submucosa with good (but variable) lymphoid component, small portion of muscularis in 1 piece
|
Acceptable
|
 |
GTEX-1I1GU
|
41-50
|
Male
|
GTEX-1I1GU-0626 |
Omentum
|
PAXgene |
0
|
2 pieces; 2mm partial lymph node in 1 piece [labeled]
|
Acceptable
|
 |
GTEX-1I1GU
|
41-50
|
Male
|
GTEX-1I1GU-0826 |
Thyroid gland
|
PAXgene |
0
|
2 pieces; 0.6mm focus of skeletal muscle in fibrous capsule on edge of 1 piece [circled]
|
Acceptable
|
 |
GTEX-1I1GU
|
41-50
|
Male
|
GTEX-1I1GU-1026 |
Mammary tissue (breast)
|
PAXgene |
0
|
2 pieces; 2 small ducts (circled) in adipose tissue with <2% fibrous content
|
Acceptable
|
 |
GTEX-1I1GU
|
41-50
|
Male
|
GTEX-1I1GU-1626 |
Ileum
|
PAXgene |
1
|
6 pieces; only 2 small [0.5mm] lymphoid nodules in otherwise well preserved ileal mucosa. LCM
|
Unacceptable
|
 |