GTEX-QDVJ
|
51-60
|
Male
|
GTEX-QDVJ-1826 |
Adipose tissue
|
PAXgene |
1
|
2 pieces 10x6 & 7x6 mm; well fixed; no hollow core
|
Acceptable
|
|
GTEX-QDVJ
|
51-60
|
Male
|
GTEX-QDVJ-1926 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces; 9x6 & 8x7mm; severe tissue fracture in one piece (histology origin)
|
Acceptable
|
|
GTEX-QDVJ
|
51-60
|
Male
|
GTEX-QDVJ-2026 |
Nerve - tibial
|
PAXgene |
1
|
2 pieces, 5x3 mm; 5% external fat
|
Acceptable
|
|
GTEX-QDVJ
|
51-60
|
Male
|
GTEX-QDVJ-2126 |
Artery - tibial
|
PAXgene |
2
|
2 pieces, 2.4 mm; mild intimal thickening; no external fat
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-0126 |
Coronary artery
|
PAXgene |
1
|
2 aliquots, 3x2mm & 5x1mm, each with ~1mm rim of surrounding fat; minimal occlusive atherosclerosis
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-0226 |
Aorta
|
PAXgene |
1
|
6 ~10x1.2mm pieces
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-0326 |
Heart
|
PAXgene |
1
|
2 ~11x10mm aliquots. Mild interstitial fibrosis, subacute ischemic changes (boxcar nuclei; contraction bands)
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-0426 |
Adrenal glands
|
PAXgene |
1
|
2 ~22x3mm aliquots, clean, well-preserved
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-0526 |
Spleen
|
PAXgene |
1
|
2 ~12x9mm aliquots. Reasonably well-preserved
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-0626 |
Thyroid gland
|
PAXgene |
1
|
2 ~12x10mm aliquots, one with incidental 0.5mm adenoma
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-0726 |
Lung
|
PAXgene |
2
|
2 ~13x7mm aliquots. Diffuse mild acute pneumonia/mild congestion
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-0826 |
Liver
|
PAXgene |
1
|
2 ~9.5x8mm aliquots. Macrovesicular steatohepatitis (~20% fat), bridging fibrosis focally approaching early cirrhosis; moderate chronic inflammation
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-0926 |
Pancreas
|
PAXgene |
1
|
2 ~7.5x6.5mm aliquots, ~30% interstitial fat, reduced numbers of Islets
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
4 5x3mm pieces; squamous mucosa is ~10% of thickness
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1126 |
Esophagus - muscularis
|
PAXgene |
1
|
6 ~5x4mm pieces
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1226 |
Stomach
|
PAXgene |
1
|
6 ~9.5x3.5mm pieces. Well-preserved mucosa is 20-30% of thickness
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1326 |
Colon, transverse
|
PAXgene |
2
|
6 ~9x3.5mm pieces; mucosa is ~10-12% thickness, only seen in 4 of 6 pieces
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1426 |
Urinary bladder
|
PAXgene |
3
|
1 (muscle)-3(urothelium); 6 9.5x6mm pieces; urothelium totally sloughed in places; where present, <1% of thickness
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1526 |
Prostate
|
PAXgene |
1
|
2 ~9x6mm aliquots, patchy glandular hyperplasia
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1626 |
Kidney - cortex
|
PAXgene |
2
|
6 ~8.5x3.5mm pieces. Diffuse interstitial fibrosis with chronic interstitial nephritis
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1726 |
Kidney - cortex
|
PAXgene |
1
|
2 aliquots, ~8x6mm. All cortex with numerous glomeruli, interstitial fibrosis and chronic interstitial nephritis. Can be release from quarantine once correctly labeled as renal cortex, one aliquot is ~30% fat
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-1926 |
Testis
|
PAXgene |
1
|
2 ~11x5mm aliquots. Spermatogenesis appears reduced/arrested
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-2026 |
Skin, leg
|
PAXgene |
1
|
6 ~6.5x2.5mm pieces; squamous epithelium is ~1--2% of thickness
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-2126 |
Adipose tissue
|
PAXgene |
1
|
2 ~9x6mm aliquots, one with ~40% fibrous (?scar) tissue
|
Acceptable
|
|
GTEX-QDVN
|
51-60
|
Male
|
GTEX-QDVN-2226 |
Nerve - tibial
|
PAXgene |
1
|
2 ~7.5x4mm aliquots, nerve bundles widely dispersed; ~ 70% both aliquots is interstitial fat
|
Acceptable
|
|