GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1726 |
Adrenal glands
|
PAXgene |
3
|
2 ~7x3mm pieces, one fragmented. ~15% fat, saponified
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1826 |
Kidney - cortex
|
PAXgene |
2
|
6 ~8x3mm pieces. Glomeruli present in 5 of 6 aliquots. Autolysis worse in tubules.
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-1926 |
Kidney - cortex
|
PAXgene |
2
|
2 ~9x8mm pieces. Cortex, not medulla; numerous glomeruli1
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2026 |
Urinary bladder
|
PAXgene |
2
|
6 ~8x3.5mm pieces. Urothelium completely sloughed
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2126 |
Cervix - ectocervix
|
PAXgene |
2
|
5 ~ 5x3mm pieces, 2 with partially sloughed squamous mucosa, ~5-10% of aliquot thickness
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2226 |
Cervix - endocervix
|
PAXgene |
2
|
2 (stroma); 4 ~5x3mm pieces; no visible mucosal/glands
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2326 |
Fallopian tube
|
PAXgene |
3
|
2 ~ 4mm d. pieces. Mucosa totally autolyzed/sloughed
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2426 |
Uterus
|
PAXgene |
3
|
2 ~11x3.5mm pieces, mainly myometrium. 1 aliquot has a ~ 3x1.6mm focus of autolyzed atrophic glands/stroma
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2526 |
Stomach
|
PAXgene |
2
|
2-3 (mucosa);1-2 (muscularis), 6 ~10x2mm pieces. Mucosa is ~25% of aliquot thickness; near-total autolysis
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2626 |
Colon, transverse
|
PAXgene |
2
|
3 (mucosa); 1-2 (muscularis); 6 ~ 6.5x1.5mm pieces. Epithelium totally autolyzed; mucosa partially sloughed
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2726 |
Vagina
|
PAXgene |
1
|
6 ~ 7.5x1.5mm pieces. Squamous mucosa, partially sloughed, on 3; less than 1% of specimen thickness
|
Acceptable
|
 |
GTEX-PLZ4
|
51-60
|
Female
|
GTEX-PLZ4-2826 |
Ovary
|
PAXgene |
1
|
2 ~7x5mm pieces. Numerous corpora albicantia
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0126 |
Adrenal glands
|
PAXgene |
1
|
2 pieces, 7x3 mm, cortex
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0226 |
Spleen
|
PAXgene |
1
|
2 pieces, 8x7 & 8x6 mm, no congestion
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0326 |
Lung
|
PAXgene |
1
|
2 pieces, 11x6 & 9x9 mm; no inflammation
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0426 |
Pancreas
|
PAXgene |
1
|
2 pieces, 8x8 & 10x8 mm, 10-20% embedded fat
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0526 |
Stomach
|
PAXgene |
1
|
7 pieces up to 10x4 mm; mucosa ~1 mm thick
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0626 |
Esophagus - mucosa
|
PAXgene |
1
|
5 pieces ~7x3mm, all with good epithelium
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0726 |
Esophagus - muscularis
|
PAXgene |
1
|
5 pieces up to 7x5mm
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0826 |
Urinary bladder
|
PAXgene |
2
|
6 pieces up to 9.6x4.8 mm; 3 have mucosa but largely sloughed, 3 only muscularis
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-0926 |
Fallopian tube
|
PAXgene |
1
|
2 pieces ~6x3 & 3x2.8; needs re-labeling
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1026 |
Cervix - ectocervix
|
PAXgene |
1
|
2 pieces ~8x2.6mm; epithelium folded
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1126 |
Cervix - endocervix
|
PAXgene |
2
|
4 pieces up to ~6x4.5 mm; 2 have apparent glands
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1226 |
Vagina
|
PAXgene |
1
|
6 pieces, up to 11x5.5 mm; atrophic epithelium
|
Acceptable
|
 |
GTEX-QCQG
|
51-60
|
Female
|
GTEX-QCQG-1326 |
Uterus
|
PAXgene |
1
|
2 pieces up to ~8x3mm, atrophic endometrium
|
Acceptable
|
 |