GTEX-17F9Y
|
61-70
|
Female
|
GTEX-17F9Y-2926 |
Ileum
|
PAXgene |
3
|
4 pieces markedly autolyzed, correct targeet; insufficient target lymphoid elements
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces, muscular fragemntes/adipose tissue, not correct GTEx target or obvious switch
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1326 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, gastric mucosa, not correct target
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-1426 |
Ileum
|
PAXgene |
1
|
6 pieces, mucosa/muscularis, less than 5% lymphoid aggregates
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-2126 |
Nerve - tibial
|
PAXgene |
0
|
2 pieces, muscular artery, not obvious switch, not GTEx target tissue
|
Unacceptable
|
 |
GTEX-17GQL
|
61-70
|
Male
|
GTEX-17GQL-5010 |
Esophagus - mucosa
|
Dry Ice |
|
1 piece fibroadipose tissue, as with PGT aliquot, incorrect target--coorrelates.
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0426 |
Colon, transverse
|
PAXgene |
3
|
6 pieces; full thickness sections, extensive autolysis
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0626 |
Ileum
|
PAXgene |
3
|
4 pieces; good lymphoid component, but too autolyzed
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-0926 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; skeletal muscle indicating sampling of upper esophagus
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-2026 |
Vagina
|
PAXgene |
2
|
6 pieces; epithelium is denuded/autolyzed
|
Unacceptable
|
 |
GTEX-17HG3
|
21-40
|
Female
|
GTEX-17HG3-2426 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; one piece is artery, one is nerve
|
Unacceptable
|
 |
GTEX-17HGU
|
51-60
|
Male
|
GTEX-17HGU-2526 |
Ileum
|
PAXgene |
3
|
4 fragmented pieces; severe autolysis and too little intact lymphoid tissue
|
Unacceptable
|
 |
GTEX-17HHY
|
51-60
|
Male
|
GTEX-17HHY-1326 |
Coronary artery
|
PAXgene |
1
|
2 fragmented pieces of extensively fibrocalcific and muscle tissue
|
Unacceptable
|
 |
GTEX-17HHY
|
51-60
|
Male
|
GTEX-17HHY-1626 |
Esophagus - mucosa
|
PAXgene |
2
|
6 pieces; largely sloughed epithelium; muscularis mucosae adequate for LCM
|
Unacceptable
|
 |
GTEX-17HHY
|
51-60
|
Male
|
GTEX-17HHY-2426 |
Stomach
|
PAXgene |
3
|
6 pieces; severely autolyzed mucosa and moderately autolyzed muscularis
|
Unacceptable
|
 |
GTEX-17HHY
|
51-60
|
Male
|
GTEX-17HHY-2626 |
Ileum
|
PAXgene |
3
|
4 pieces: lymphoid and mucosal tissue severely autolyzed
|
Unacceptable
|
 |
GTEX-17JCI
|
61-70
|
Female
|
GTEX-17JCI-2726 |
Ileum
|
PAXgene |
3
|
4 pieces; too few lymphoid cells in autolyzed mucosa; 2 nodules circled for possible LCM
|
Unacceptable
|
 |
GTEX-17KNJ
|
51-60
|
Male
|
GTEX-17KNJ-0126 |
Prostate
|
PAXgene |
1
|
2 pieces, hyerplasia, several 1-2 mm microfoci of Adenocarcinoma, 3+3=6, ensquared
|
Unacceptable
|
 |
GTEX-17KNJ
|
51-60
|
Male
|
GTEX-17KNJ-0726 |
Coronary artery
|
PAXgene |
1
|
2 pieces, correct target but abundant adherent fat/myocardium(delineated) are ~80% of specimen
|
Unacceptable
|
 |
GTEX-17KNJ
|
51-60
|
Male
|
GTEX-17KNJ-1426 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces, ~50% squamous mucosa, rest is stroma/mucus glands. <10% target muscularis present
|
Unacceptable
|
 |
GTEX-17MF6
|
41-50
|
Male
|
GTEX-17MF6-1926 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; diffuse, severe pyelonephritis with abscess formation (arrow); glomeruli suggestive of membranous process (rep outlined)
|
Unacceptable
|
 |
GTEX-17MF6
|
41-50
|
Male
|
GTEX-17MF6-2526 |
Ileum
|
PAXgene |
3
|
4 pieces; autolyzed mucosa and too dispersed lymphoid aggregates to warrant further analysis; LCM
|
Unacceptable
|
 |
GTEX-17MFQ
|
21-40
|
Male
|
GTEX-17MFQ-0226 |
Pancreas
|
PAXgene |
1
|
2 pieces, sections of artery, unknown provenance, no pancreas
|
Unacceptable
|
 |
GTEX-17MFQ
|
21-40
|
Male
|
GTEX-17MFQ-0326 |
Thyroid gland
|
PAXgene |
1
|
2 pieces, skeletal muscle, unknown provenance, no thyroid identified, not GTEx target
|
Unacceptable
|
 |
GTEX-17MFQ
|
21-40
|
Male
|
GTEX-17MFQ-0426 |
Stomach
|
PAXgene |
1
|
6 pieces, muscularis only, no mucosa
|
Unacceptable
|
 |