GTEX-16XZY
|
61-70
|
Male
|
GTEX-16XZY-1526 |
Colon, transverse
|
PAXgene |
1
|
6 pieces; muscularis withup to 0.8mm attached fat/vessels
|
Unacceptable
|
|
GTEX-16XZY
|
61-70
|
Male
|
GTEX-16XZY-1626 |
Ileum
|
PAXgene |
2
|
6 pieces; variable representation of autolyzed mucosa, excellent lymphoid component, and abundant muscularis
|
Unacceptable
|
|
GTEX-16XZY
|
61-70
|
Male
|
GTEX-16XZY-1726 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; predominantly muscularis, but 3 of 6 pieces include colonic mucosa
|
Unacceptable
|
|
GTEX-16XZY
|
61-70
|
Male
|
GTEX-16XZY-1826 |
Prostate
|
PAXgene |
0
|
2 pieces; focus of adenocarcinoma, Gleason score 4+3=7
|
Unacceptable
|
|
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-1226 |
Coronary artery
|
PAXgene |
1
|
2 fragmented pieces; excessively calcified and fragmented; 10% normal target remains
|
Unacceptable
|
|
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-1826 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces; epithelium severely autolyzed; muscularis mucosae too dispersed for adequate sampling
|
Unacceptable
|
|
GTEX-16XZZ
|
61-70
|
Male
|
GTEX-16XZZ-2526 |
Ileum
|
PAXgene |
3
|
6 pieces; virtually no lymphoid tissue in strips of autolyzed mucosa
|
Unacceptable
|
|
GTEX-16Z82
|
61-70
|
Male
|
GTEX-16Z82-2326 |
Ileum
|
PAXgene |
2
|
4 pieces; 3 small lymphoid foci [labeled] in totally autolyzed mucosa; LCM
|
Unacceptable
|
|
GTEX-16Z82
|
61-70
|
Male
|
GTEX-16Z82-2526 |
Prostate
|
PAXgene |
2
|
2 pieces; no prostatic glands, only fibromuscular and fatty stroma with chronic inflammation, resembles bladder wall
|
Unacceptable
|
|
GTEX-178AV
|
41-50
|
Male
|
GTEX-178AV-1526 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, abundant mucosa, not correct target
|
Unacceptable
|
|
GTEX-17EUY
|
21-40
|
Male
|
GTEX-17EUY-1626 |
Ileum
|
PAXgene |
2
|
6 pieces; three include muscularis (not target), partially autolyzed mucosa/submucosa with substantial lymphoid component
|
Unacceptable
|
|
GTEX-17EVP
|
41-50
|
Male
|
GTEX-17EVP-1926 |
Stomach
|
PAXgene |
3
|
6 pieces; autolyzed mucosa and muscularis propria
|
Unacceptable
|
|
GTEX-17EVP
|
41-50
|
Male
|
GTEX-17EVP-2026 |
Esophagus - mucosa
|
PAXgene |
3
|
6 pieces; sloughed & autolyzed mucosa
|
Unacceptable
|
|
GTEX-17EVP
|
41-50
|
Male
|
GTEX-17EVP-2326 |
Prostate
|
PAXgene |
3
|
2 pieces; autolyzed parenchyma and stroma
|
Unacceptable
|
|
GTEX-17EVP
|
41-50
|
Male
|
GTEX-17EVP-2826 |
Ileum
|
PAXgene |
3
|
4 pieces; autolyzed mucosa and target lymphoid aggregates
|
Unacceptable
|
|
GTEX-17F97
|
51-60
|
Male
|
GTEX-17F97-0826 |
Coronary artery
|
PAXgene |
1
|
3 pieces; calcified, sclerotic, fragmented; no normal tissue remains; [had coronary bypass]
|
Unacceptable
|
|
GTEX-17F97
|
51-60
|
Male
|
GTEX-17F97-1526 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; adipose tissue, not muscle
|
Unacceptable
|
|
GTEX-17F97
|
51-60
|
Male
|
GTEX-17F97-2126 |
Ileum
|
PAXgene |
3
|
4 pieces; too little lymphoid tissue
|
Unacceptable
|
|
GTEX-17F98
|
41-50
|
Female
|
GTEX-17F98-1226 |
Colon, sigmoid
|
PAXgene |
2
|
6 pieces; all have mucosa and muscularis; LCM
|
Unacceptable
|
|
GTEX-17F98
|
41-50
|
Female
|
GTEX-17F98-1426 |
Ileum
|
PAXgene |
2
|
6 pieces; 6 lymphoid nodules in 4 pieces [circled for LCM]; all have muscularis [not target]
|
Unacceptable
|
|
GTEX-17F9E
|
51-60
|
Male
|
GTEX-17F9E-1526 |
Ileum
|
PAXgene |
1
|
6 pieces, well preserved, no target lympohid aggregates, not worth GTEX analysis. Contaminant pancreatic tisue present, ensquared
|
Unacceptable
|
|
GTEX-17F9E
|
51-60
|
Male
|
GTEX-17F9E-1726 |
Prostate
|
PAXgene |
1
|
2 pieces, all seminal vesicle, not GTEx target
|
Unacceptable
|
|
GTEX-17F9E
|
51-60
|
Male
|
GTEX-17F9E-2026 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces, extnesive mucosa, not GTEx target
|
Unacceptable
|
|
GTEX-17F9E
|
51-60
|
Male
|
GTEX-17F9E-5016 |
Prostate
|
Dry Ice |
|
1 piece, correleates with PFPE aliquot--seminal vesicle, not GTEx target
|
Unacceptable
|
|
GTEX-17F9Y
|
61-70
|
Female
|
GTEX-17F9Y-1126 |
Muscle, skeletal
|
PAXgene |
1
|
2 pieces, minimal muscle, mainly fibroadipose tissue
|
Unacceptable
|
|