GTEX-11ZVC
|
51-60
|
Female
|
GTEX-11ZVC-2026 |
Ileum
|
PAXgene |
2
|
5 pieces; abundant lymphoid tissue [delineated]; mucosa autolyzed but lymphoid tissue still appears intact
|
Acceptable
|
|
GTEX-1211K
|
61-70
|
Female
|
GTEX-1211K-1626 |
Ileum
|
PAXgene |
1
|
6 pieces, all colon, unknown site, not GTEx target
|
Unacceptable
|
|
GTEX-1212Z
|
61-70
|
Male
|
GTEX-1212Z-1726 |
Ileum
|
PAXgene |
2
|
6 pieces, autolyzed mucosa with prominent lymphoid tissue, some residual muscularis (not target)
|
Unacceptable
|
|
GTEX-12584
|
41-50
|
Male
|
GTEX-12584-2426 |
Ileum
|
PAXgene |
3
|
6 pieces; mucosa completely autolyzed; insufficient lymphoid tissue
|
Unacceptable
|
|
GTEX-12696
|
61-70
|
Male
|
GTEX-12696-2326 |
Ileum
|
PAXgene |
2
|
6 pieces, lympohoid aggregates are ~50% of tissue
|
Acceptable
|
|
GTEX-1269C
|
61-70
|
Female
|
GTEX-1269C-2126 |
Ileum
|
PAXgene |
2
|
6 pieces, autolyzed mucosa with residual lymphoid component, well trimmed of muscularis
|
Acceptable
|
|
GTEX-12BJ1
|
61-70
|
Male
|
GTEX-12BJ1-1926 |
Ileum
|
PAXgene |
1
|
6 pieces, well preserved, good lymphoid aggregates, ~40% total tisssue; rep foci delineated
|
Acceptable
|
|
GTEX-12C56
|
21-40
|
Male
|
GTEX-12C56-0926 |
Ileum
|
PAXgene |
2
|
6 pieces, moderately autolyzed mucosa with abundant lymphoid tissue, muscularis (not target) also present in every piece
|
Unacceptable
|
|
GTEX-12KS4
|
21-40
|
Male
|
GTEX-12KS4-2226 |
Ileum
|
PAXgene |
3
|
4 pieces, mucosa autolyzed, ~20% residual lymphoid elements present
|
Acceptable
|
|
GTEX-12WS9
|
51-60
|
Female
|
GTEX-12WS9-1926 |
Ileum
|
PAXgene |
3
|
4 pieces, mucosa badly autolyzed; ~10% residual lymphod aggregates present, rep. delineated
|
Acceptable
|
|
GTEX-12WSA
|
61-70
|
Male
|
GTEX-12WSA-2626 |
Ileum
|
PAXgene |
3
|
4 pieces, mucosa markedly autolyzed; lymphoid aggregates~20% lympphoid aggregates
|
Acceptable
|
|
GTEX-12WSB
|
61-70
|
Female
|
GTEX-12WSB-2626 |
Ileum
|
PAXgene |
3
|
4 pieces; too little lymphoid tissue; excessive autolysis
|
Unacceptable
|
|
GTEX-12WSC
|
51-60
|
Male
|
GTEX-12WSC-2226 |
Ileum
|
PAXgene |
3
|
4 pieces, muscularis and severely autolyzed mucosa, small focus of residual lymphoid tissue
|
Unacceptable
|
|
GTEX-12WSD
|
61-70
|
Female
|
GTEX-12WSD-2526 |
Ileum
|
PAXgene |
2
|
4 pieces, fragmented, lympoid tissue is ~5-10% total
|
Acceptable
|
|
GTEX-12WSE
|
21-40
|
Male
|
GTEX-12WSE-2826 |
Ileum
|
PAXgene |
3
|
4 pieces; too autolyzed and with minimal lymphoid tissue
|
Unacceptable
|
|
GTEX-12WSF
|
61-70
|
Male
|
GTEX-12WSF-2726 |
Ileum
|
PAXgene |
3
|
6 pieces, ~10% lymphoid aggregates
|
Acceptable
|
|
GTEX-12WSG
|
51-60
|
Female
|
GTEX-12WSG-2226 |
Ileum
|
PAXgene |
2
|
6 pieces, variably autolyzed and sloughed mucosa with prominent residual lymphoid tissue, muscularis (not target)
|
Unacceptable
|
|
GTEX-12WSH
|
51-60
|
Male
|
GTEX-12WSH-1626 |
Ileum
|
PAXgene |
2
|
6 pieces; lymphoid tissue annotated; mucosa completely autolyzed
|
Acceptable
|
|
GTEX-12WSI
|
51-60
|
Male
|
GTEX-12WSI-1926 |
Ileum
|
PAXgene |
3
|
4 pieces, mucosa autolzyed, ~10% lymphoid aggregateds
|
Acceptable
|
|
GTEX-12WSJ
|
41-50
|
Female
|
GTEX-12WSJ-1626 |
Ileum
|
PAXgene |
2
|
6 pieces, autolyzed mucosa, but with residual lymphoid tissue, muscularis (not target) also present
|
Unacceptable
|
|
GTEX-12WSK
|
41-50
|
Female
|
GTEX-12WSK-1526 |
Ileum
|
PAXgene |
2
|
6 pieces, mucosa moderately autolyzed but lymphoid aggregates well preserved, ~5-10% of sections; rep one delineated.
|
Acceptable
|
|
GTEX-12WSL
|
51-60
|
Male
|
GTEX-12WSL-1726 |
Ileum
|
PAXgene |
1
|
6 pieces; abundant lymphoid tissue [annotated]; muscle (not target) in 5 pieces
|
Acceptable
|
|
GTEX-12WSM
|
61-70
|
Male
|
GTEX-12WSM-1626 |
Ileum
|
PAXgene |
3
|
6 pieces, mucosa autolyzed, lymphoid aggregates are ~15-20% total
|
Acceptable
|
|
GTEX-12WSN
|
41-50
|
Male
|
GTEX-12WSN-1726 |
Ileum
|
PAXgene |
2
|
6 pieces; only one lymphoid aggregate (outlined) 0.4 mm
|
Unacceptable
|
|
GTEX-12ZZW
|
51-60
|
Male
|
GTEX-12ZZW-2726 |
Ileum
|
PAXgene |
3
|
5 pieces; mucosa autolyzed but lymphoid aggregates remain, ~10-15% total tissue
|
Acceptable
|
|