GTEX-1CB4E
|
61-70
|
Male
|
GTEX-1CB4E-1126 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; 2 pieces have 4 foci of vegetable material, ~0.2mm, embedded in submucosa [labeled] consistent with carry-over as they are not present in submucosa of 1025
|
Acceptable
|
 |
GTEX-1CB4E
|
61-70
|
Male
|
GTEX-1CB4E-1626 |
Colon, sigmoid
|
PAXgene |
1
|
6 pieces; contains mucosa as well as muscularis in 3 of 6 pieces; may have been switched with transverse colon
|
Unacceptable
|
 |
GTEX-1CB4E
|
61-70
|
Male
|
GTEX-1CB4E-1926 |
Nerve - tibial
|
PAXgene |
1
|
2 small (1.2 mm) pieces in fibrous capsules
|
Acceptable
|
 |
GTEX-1CB4E
|
61-70
|
Male
|
GTEX-1CB4E-2026 |
Artery - tibial
|
PAXgene |
1
|
2 pieces; severe fibrous intimal thickening; well trimmed, but with small neural bundles in adventitia
|
Acceptable
|
 |
GTEX-1CB4F
|
61-70
|
Male
|
GTEX-1CB4F-0326 |
Muscle, skeletal
|
PAXgene |
0
|
2 pieces; 1 piece includes ~10% internal fat, fat in 2nd is trivial
|
Acceptable
|
 |
GTEX-1CB4F
|
61-70
|
Male
|
GTEX-1CB4F-2226 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; predominantly dense fibrocollagenous stroma with lesser component of fat (10-30%), no ductal structures in this section
|
Acceptable
|
 |
GTEX-1CB4H
|
61-70
|
Female
|
GTEX-1CB4H-0326 |
Adipose tissue
|
PAXgene |
0
|
2 pieces; 10% fibrous content in 1 piece
|
Acceptable
|
 |
GTEX-1CB4H
|
61-70
|
Female
|
GTEX-1CB4H-2426 |
Stomach
|
PAXgene |
2
|
6 pieces; glands in varying states of autolysis
|
Acceptable
|
 |
GTEX-1CB4H
|
61-70
|
Female
|
GTEX-1CB4H-2726 |
Uterus
|
PAXgene |
2
|
2 pieces; glands in a portion of 1 piece are autolyzed and resemble cervical canal, not endometrium [labeled]; adjacent endometrial glands and those in the other piece are autolyzed; stroma intact
|
Acceptable
|
 |
GTEX-1CB4H
|
61-70
|
Female
|
GTEX-1CB4H-2826 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; atrophic ducts in fibrofatty tiisue
|
Acceptable
|
 |
GTEX-1CB4I
|
51-60
|
Male
|
GTEX-1CB4I-0226 |
Skin, leg
|
PAXgene |
1
|
6 pieces; up to 1 mm subcutaneous fat in 2 of 6 pieces; up to 10% dermal fat
|
Acceptable
|
 |
GTEX-1CB4I
|
51-60
|
Male
|
GTEX-1CB4I-1026 |
Esophagus - mucosa
|
PAXgene |
1
|
6 pieces; up to 50% fibrovascular and fatty content in submucosal portion
|
Acceptable
|
 |
GTEX-1CB4I
|
51-60
|
Male
|
GTEX-1CB4I-1126 |
Esophagus - muscularis
|
PAXgene |
1
|
6 pieces; 20% admixture with skeletal muscle; up to 30% fibrovascular and fatty content in submucosal portion
|
Unacceptable
|
 |
GTEX-1CB4I
|
51-60
|
Male
|
GTEX-1CB4I-2026 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; multiple seedling leiomyomas (<1 mm) in 3 of 6 pieces [arrowed]
|
Acceptable
|
 |
GTEX-1E1VI
|
51-60
|
Male
|
GTEX-1E1VI-2326 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; glomeruli in all pieces
|
Acceptable
|
 |
GTEX-1EKGG
|
61-70
|
Male
|
GTEX-1EKGG-2226 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; glomeruli in all sections, some sclerotic
|
Acceptable
|
 |
GTEX-1EN7A
|
41-50
|
Male
|
GTEX-1EN7A-0626 |
Atrial appendage
|
PAXgene |
1
|
2 pieces; 20% fibrous content in 1, 20% fat content in other piece
|
Acceptable
|
 |
GTEX-1EN7A
|
41-50
|
Male
|
GTEX-1EN7A-1526 |
Gastroesophageal junction
|
PAXgene |
1
|
6 pieces; minute foci of squamous epithelial cells in submucosal stroma; otherwise well trimmed muscle
|
Acceptable
|
 |
GTEX-1EWIQ
|
61-70
|
Female
|
GTEX-1EWIQ-2126 |
Kidney - cortex
|
PAXgene |
2
|
6 pieces; glomeruli in all sections, few sclerotic
|
Acceptable
|
 |
GTEX-1EWIQ
|
61-70
|
Female
|
GTEX-1EWIQ-3226 |
Pituitary gland
|
PAXgene |
2
|
1 piece; adenohypophysis in this section
|
Acceptable
|
 |
GTEX-1F48J
|
51-60
|
Female
|
GTEX-1F48J-0626 |
Mammary tissue (breast)
|
PAXgene |
1
|
2 pieces; atrophic ducts and lobules in 1, all adipose in other
|
Acceptable
|
 |
GTEX-1F48J
|
51-60
|
Female
|
GTEX-1F48J-1026 |
Heart
|
PAXgene |
1
|
2 pieces; no scars; 5% internal fat in 1 piece
|
Acceptable
|
 |
GTEX-1F48J
|
51-60
|
Female
|
GTEX-1F48J-2026 |
Pancreas
|
PAXgene |
2
|
2 pieces; 20% external fat on 1 piece; large ducts in 1 piece; suspicious for PanIN 1, but too autolyzed to be certain [circled]
|
Acceptable
|
 |
GTEX-1F48J
|
51-60
|
Female
|
GTEX-1F48J-2326 |
Ovary
|
PAXgene |
1
|
2 pieces; atrophic with 50% external fibrous content in 1 piece
|
Acceptable
|
 |
GTEX-1F48J
|
51-60
|
Female
|
GTEX-1F48J-2426 |
Uterus
|
PAXgene |
1
|
2 pieces; no glands all myometrium in this cut
|
Acceptable
|
 |